miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 285 bits (144), Expect = 8e-77
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 6 accaacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 accaacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaa 85
Query: 66 cttacttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 cttacttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaa 25
Query: 126 tgcagataaaggcaacatgttggc 149
||||||||||||||||||||||||
Sbjct: 24 tgcagataaaggcaacatgttggc 1
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 73.8 bits (37), Expect = 6e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 109 taaggtgcaggtgcaaatgcagataaaggcaacatgttggc 149
||||||||||||||||||||||||||||||||||| |||||
Sbjct: 41 taaggtgcaggtgcaaatgcagataaaggcaacatattggc 1
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 114 tgcaggtgcaaatgcagataaaggcaacatgttggc 149
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 tgcaggtgcaaatgcagataaaggcaacatattggc 1
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 6 accaacatggcattcacctgcacctgcacctgcacctcaa 45
||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 172 accaaaatggcattcacctgcacttgcacctgcacctcaa 133
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 109 taaggtgcaggtgcaaatgcagataaaggcaacat 143
||||||||||||||||||||||||||||| |||||
Sbjct: 41 taaggtgcaggtgcaaatgcagataaaggaaacat 7
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 99 aagaaacaagtaaggtgcaggtgcaaatgcagataaagg 137
||||| ||||||| |||||||||||||||||||||||||
Sbjct: 50 aagaaccaagtaaagtgcaggtgcaaatgcagataaagg 12
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 99 aagaaacaagtaaggtgcaggtgcaaatgcagataaagg 137
||||| ||||||| |||||||||||||||||||||||||
Sbjct: 108 aagaaccaagtaaagtgcaggtgcaaatgcagataaagg 146
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 109 taaggtgcaggtgcaaatgcagataaaggc 138
||||||||||||||||||||||||||||||
Sbjct: 41 taaggtgcaggtgcaaatgcagataaaggc 12
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 tggcattcacctgcacctgcacctgcacct 42
||||||||| |||||||| |||||||||||
Sbjct: 154 tggcattcatctgcaccttcacctgcacct 125
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 110 aaggtgcaggtgcaaatgcagataaa 135
||||||||||||||||||||||||||
Sbjct: 36 aaggtgcaggtgcaaatgcagataaa 11
>RF01005;MIR530;CAAP02002388.1/48571-48426 29760:Vitis vinifera
Length = 146
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 108 gtaaggtgcaggtgcaaatgcagataaa 135
||||||||||||| ||||||||||||||
Sbjct: 41 gtaaggtgcaggtacaaatgcagataaa 14
>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
(castor bean)
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 gtgcaggtgcaaatgcagataaa 135
|||||||||||||||||||||||
Sbjct: 38 gtgcaggtgcaaatgcagataaa 16
>RF01005;MIR530;AM473995.2/8334-8489 29760:Vitis vinifera
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 109 taaggtgcaggtgcaaatgcagataaa 135
||||||||| |||||||||||||||||
Sbjct: 47 taaggtgcaagtgcaaatgcagataaa 21
