miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
          Length = 144

 Score =  285 bits (144), Expect = 8e-77
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                       
Query: 6   accaacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 accaacatggcattcacctgcacctgcacctgcacctcaagcttgttttaatgtttcaaa 85

                                                                       
Query: 66  cttacttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  cttacttttggttttggagtcaaaaacaaaagaaagaaacaagtaaggtgcaggtgcaaa 25

                                   
Query: 126 tgcagataaaggcaacatgttggc 149
           ||||||||||||||||||||||||
Sbjct: 24  tgcagataaaggcaacatgttggc 1




>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
           (castor bean)
          Length = 177

 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 109 taaggtgcaggtgcaaatgcagataaaggcaacatgttggc 149
           ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 41  taaggtgcaggtgcaaatgcagataaaggcaacatattggc 1




>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
          Length = 172

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 114 tgcaggtgcaaatgcagataaaggcaacatgttggc 149
           |||||||||||||||||||||||||||||| |||||
Sbjct: 36  tgcaggtgcaaatgcagataaaggcaacatattggc 1



 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 6   accaacatggcattcacctgcacctgcacctgcacctcaa 45
           ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 172 accaaaatggcattcacctgcacttgcacctgcacctcaa 133




>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
           (papaya)
          Length = 156

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 109 taaggtgcaggtgcaaatgcagataaaggcaacat 143
           ||||||||||||||||||||||||||||| |||||
Sbjct: 41  taaggtgcaggtgcaaatgcagataaaggaaacat 7




>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
          Length = 167

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 99  aagaaacaagtaaggtgcaggtgcaaatgcagataaagg 137
           ||||| ||||||| |||||||||||||||||||||||||
Sbjct: 50  aagaaccaagtaaagtgcaggtgcaaatgcagataaagg 12




>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
          Length = 154

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 99  aagaaacaagtaaggtgcaggtgcaaatgcagataaagg 137
           ||||| ||||||| |||||||||||||||||||||||||
Sbjct: 108 aagaaccaagtaaagtgcaggtgcaaatgcagataaagg 146




>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
          Length = 161

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 109 taaggtgcaggtgcaaatgcagataaaggc 138
           ||||||||||||||||||||||||||||||
Sbjct: 41  taaggtgcaggtgcaaatgcagataaaggc 12



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 13  tggcattcacctgcacctgcacctgcacct 42
           ||||||||| |||||||| |||||||||||
Sbjct: 154 tggcattcatctgcaccttcacctgcacct 125




>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
          Length = 175

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 110 aaggtgcaggtgcaaatgcagataaa 135
           ||||||||||||||||||||||||||
Sbjct: 36  aaggtgcaggtgcaaatgcagataaa 11




>RF01005;MIR530;CAAP02002388.1/48571-48426 29760:Vitis vinifera
          Length = 146

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 108 gtaaggtgcaggtgcaaatgcagataaa 135
           ||||||||||||| ||||||||||||||
Sbjct: 41  gtaaggtgcaggtacaaatgcagataaa 14




>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
           (castor bean)
          Length = 109

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 113 gtgcaggtgcaaatgcagataaa 135
           |||||||||||||||||||||||
Sbjct: 38  gtgcaggtgcaaatgcagataaa 16




>RF01005;MIR530;AM473995.2/8334-8489 29760:Vitis vinifera
          Length = 156

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 109 taaggtgcaggtgcaaatgcagataaa 135
           ||||||||| |||||||||||||||||
Sbjct: 47  taaggtgcaagtgcaaatgcagataaa 21