miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AC189416.2/88220-88122 51351:Brassica rapa subsp.
           pekinensis
          Length = 99

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 121 ttagattcacgcacaaactcgtaatatgtct 151
           ||||||||||||||||||||||||| |||||
Sbjct: 69  ttagattcacgcacaaactcgtaatctgtct 99




>RF00842;MIR403;EU549672.1/167-284 3702:Arabidopsis thaliana (thale
           cress)
          Length = 118

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 121 ttagattcacgcacaaactcgtaatatgtct 151
           ||||||||||||||||||||||||| |||||
Sbjct: 88  ttagattcacgcacaaactcgtaatctgtct 118




>RF00842;MIR403;AARH01001226.1/54332-54202 3694:Populus trichocarpa
          Length = 131

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 121 ttagattcacgcacaaactcgtaatatgtct 151
           ||||||||||||||||||||||||| |||||
Sbjct: 101 ttagattcacgcacaaactcgtaatctgtct 131




>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
          Length = 108

 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 121 ttagattcacgcacaaactcgtaatatgtct 151
           ||||||||||||||||||||||||| |||||
Sbjct: 78  ttagattcacgcacaaactcgtaatctgtct 108




>RF00842;MIR403;ABIM01005602.1/13538-13393 3649:Carica papaya
           (papaya)
          Length = 146

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 122 tagattcacgcacaaactcgtaatatgtct 151
           |||||||||||||||||||||||| |||||
Sbjct: 117 tagattcacgcacaaactcgtaatctgtct 146




>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
           (castor bean)
          Length = 108

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 120 gttagattcacgcacaaactcgtaatatgtct 151
           ||||||||||||||||||||||| || |||||
Sbjct: 77  gttagattcacgcacaaactcgtgatctgtct 108




>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
          Length = 115

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 119 cgttagattcacgcacaaactcgt 142
           ||||||||||||||||||||||||
Sbjct: 83  cgttagattcacgcacaaactcgt 106




>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
           trichocarpa
          Length = 99

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 119 cgttagattcacgcacaaactcg 141
           |||||||||||||||||||||||
Sbjct: 67  cgttagattcacgcacaaactcg 89




>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
           (castor bean)
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 120 gttagattcacgcacaaactcgt 142
           |||||||||||||||||||||||
Sbjct: 74  gttagattcacgcacaaactcgt 96




>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
          Length = 86

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 120 gttagattcacgcacaaactcg 141
           ||||||||||||||||||||||
Sbjct: 55  gttagattcacgcacaaactcg 76




>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
          Length = 86

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 120 gttagattcacgcacaaactcg 141
           ||||||||||||||||||||||
Sbjct: 55  gttagattcacgcacaaactcg 76