miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
          Length = 144

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  ttgcctttgcctgcatttgcacctgcacctt 31
          ||||||||  |||||||||||||||||||||
Sbjct: 10 ttgcctttatctgcatttgcacctgcacctt 40




>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
          (castor bean)
          Length = 177

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  ttgcctttgcctgcatttgcacctgcacctt 31
          ||||||||  |||||||||||||||||||||
Sbjct: 10 ttgcctttatctgcatttgcacctgcacctt 40




>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
          Length = 175

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 ctgcatttgcacctgcaccttt 32
          ||||||||||||||||||||||
Sbjct: 16 ctgcatttgcacctgcaccttt 37