miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 113 bits (57), Expect = 3e-25
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 10 ctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccgctcagccc 69
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9 ctggcgcggagagggcccacagtggacttggtgacactgtatgccctaaccgctcagccc 68
Query: 70 ctggg 74
|||||
Sbjct: 69 ctggg 73
>RF00897;mir-675;AF190056.1/465-536 13125:Lynx lynx (Eurasian
lynx)
Length = 72
Score = 89.7 bits (45), Expect = 4e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 2 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 61
|||||||||||| ||||||||| ||||||| | |||||||||||||||||||| ||||||
Sbjct: 1 cccagggtctggcgcggagagg-cccacagcgtacttggtgacactgtatgccttcaccg 59
Query: 62 ctcagcccc 70
|||||||||
Sbjct: 60 ctcagcccc 68
>RF00897;mir-675;AF214115.1/794-866 230844:Peromyscus maniculatus
bairdii (prairie deer mouse)
Length = 73
Score = 60.0 bits (30), Expect = 4e-09
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 ctggtgcggagagggcccacagtggact-tggtgacactgtatgccctcaccgctcagcc 68
|||| ||||| |||||||||||||||| | ||| ||||||||||||| |||||||||||
Sbjct: 9 ctggcgcggaaagggcccacagtggacgcttgtg-cactgtatgccctaaccgctcagcc 67
Query: 69 cctggg 74
||||||
Sbjct: 68 cctggg 73
>RF00897;mir-675;AF190057.1/504-575 9685:Felis catus (domestic
cat)
Length = 72
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 tgtatgccctcaccgctcagcccctggg 74
||||||||||||||||||||||||||||
Sbjct: 45 tgtatgccctcaccgctcagcccctggg 72
>RF00897;mir-675;AF190055.1/453-521 50724:Thomomys monticola
(mountain pocket gopher)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 26 ccacagtggacttggtgacactgtatgccctcaccgctcagcccctggg 74
|||||||||||||| | || ||||||| ||| |||||||||||||||||
Sbjct: 22 ccacagtggacttgttcacgctgtatg-cctaaccgctcagcccctggg 69
>RF00897;mir-675;ABRN01220595.1/5814-5737 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 gagggcccacagtggacttggtgacactg 48
|||||||| ||||| ||||||||||||||
Sbjct: 18 gagggcccccagtgaacttggtgacactg 46
