miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00897;mir-675;AAKN02038607.1/34464-34536 10141:Cavia porcellus
(domestic guinea pig)
Length = 73
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 20 ctggtgcggagagggccaacagtggacttggtgacactgtatgccctcaccgctcagcct 79
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9 ctggcgcggagagggcccacagtggacttggtgacactgtatgccctaaccgctcagccc 68
Query: 80 ctggg 84
|||||
Sbjct: 69 ctggg 73
>RF00897;mir-675;AF190056.1/465-536 13125:Lynx lynx (Eurasian
lynx)
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 cccagggtctggtgcggagagggccaacagtggacttggtgacactgtatgccctcaccg 71
|||||||||||| ||||||||| ||| ||| | |||||||||||||||||||| ||||||
Sbjct: 1 cccagggtctggcgcggagaggccca-cagcgtacttggtgacactgtatgccttcaccg 59
Query: 72 ctcagcc 78
|||||||
Sbjct: 60 ctcagcc 66
>RF00897;mir-675;AF190057.1/504-575 9685:Felis catus (domestic
cat)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 tgtatgccctcaccgctcagcctctggg 84
|||||||||||||||||||||| |||||
Sbjct: 45 tgtatgccctcaccgctcagcccctggg 72
>RF00897;mir-675;AF214115.1/794-866 230844:Peromyscus maniculatus
bairdii (prairie deer mouse)
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 cactgtatgccctcaccgctcagcctctggg 84
||||||||||||| ||||||||||| |||||
Sbjct: 43 cactgtatgccctaaccgctcagcccctggg 73
