miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
          Length = 126

 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 79/91 (86%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                       
Query: 30  tacttgttggagaaatagatgtatccaagatgtattttaagttccaagattcatccattt 89
           |||||||  ||| ||| |||||||| ||||||||||||| |||| | ||| |||||||||
Sbjct: 103 tacttgtccgaggaatggatgtatcaaagatgtatttta-gttcta-gatacatccattt 46

                                          
Query: 90  ttaaccatttctgcgacaagtaattccggac 120
            || |||||||||||||||||| ||||||||
Sbjct: 45  atatccatttctgcgacaagtatttccggac 15




>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
           wheat)
          Length = 125

 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 82/95 (86%), Gaps = 2/95 (2%)
 Strand = Plus / Minus

                                                                       
Query: 25  ggaattacttgttggagaaatagatgtatccaagatgtattttaagttccaagattcatc 84
           |||| ||| ||| ||||||||||||||||| || | ||||||| ||||| | ||| ||| 
Sbjct: 107 ggaaatacctgtcggagaaatagatgtatctaa-acgtatttttagttcta-gatacatt 50

                                              
Query: 85  catttttaaccatttctgcgacaagtaattccgga 119
           |||||||| |||||||| |||||||||||||||||
Sbjct: 49  catttttacccatttctacgacaagtaattccgga 15




>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
           (bread wheat)
          Length = 125

 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 93/110 (84%), Gaps = 3/110 (2%)
 Strand = Plus / Minus

                                                                       
Query: 11  tactacctcggtctggaattacttgttggagaaatagatgtatccaagatgtattttaag 70
           |||| |||| ||| |||| ||||||| ||||||||  || |||| | |||||||||||| 
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatcta-gatgtattttaat 63

                                                             
Query: 71  ttccaagattcatccatttttaaccatttctgcgacaagtaattccggac 120
           |  | |||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 62  t--ctagatacatccatttttatccatttatgcgacaagtaattccggac 15




>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
          Length = 125

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 81/94 (86%), Gaps = 3/94 (3%)
 Strand = Plus / Plus

                                                                       
Query: 27  aattacttgttggagaaatagatgtatccaagatgtattttaagttccaagattcatcca 86
           ||||| |||| |||||||| |||||||| | || |||||||| |||| | ||| ||||||
Sbjct: 21  aattatttgtcggagaaatggatgtatcta-gacgtatttta-gttcta-gatacatcca 77

                                             
Query: 87  tttttaaccatttctgcgacaagtaattccggac 120
           |||||| |||||||||| ||||||| ||||||||
Sbjct: 78  tttttatccatttctgcaacaagtagttccggac 111




>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 125

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 82  atccatttttaaccatttctgcgacaagtaattccggac 120
           ||||||||||| |||||| || |||||||||||||||||
Sbjct: 73  atccatttttatccatttgtgtgacaagtaattccggac 111




>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
          Length = 125

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 76  agattcatccatttttaaccatttctgcgacaagtaattccggac 120
           |||| ||||||||||||  ||||| || |||||||||||||||||
Sbjct: 59  agatacatccatttttatacatttatgtgacaagtaattccggac 15




>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 125

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 76  agattcatccatttttaaccatttctgcgacaagtaattccggac 120
           |||| |||||||||||| | |||| ||||||||||||||| ||||
Sbjct: 67  agatacatccatttttatcaatttatgcgacaagtaattctggac 111




>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
           wheat)
          Length = 123

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 94  ccatttctgcgacaagtaattccg 117
           ||||||||||||||||||||||||
Sbjct: 49  ccatttctgcgacaagtaattccg 26




>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
          Length = 115

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 95  catttctgcgacaagtaattcc 116
           ||||||||||||||||||||||
Sbjct: 76  catttctgcgacaagtaattcc 97




>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
           wheat)
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 85/102 (83%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                       
Query: 10  gtactacctcggtctggaattacttgttggagaaatagatgtatccaagatgtattttaa 69
           ||||| |||| ||| |||| ||||||| || | ||| |||||||| | ||||||||||| 
Sbjct: 4   gtactccctccgtccggaaatacttgtcgggggaatggatgtatcta-gatgtatttta- 61

                                                     
Query: 70  gttccaagattcatccatttttaaccatttctgcgacaagta 111
           |||| | ||| ||||||||||||  ||||||| |||||||||
Sbjct: 62  gttcta-gatacatccatttttatgcatttctacgacaagta 102




>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 76  agattcatccatttttaaccatttctgcgacaagtaattccg 117
           |||| ||||||||| ||  ||||| |||||||||||||||||
Sbjct: 67  agatacatccatttctattcatttttgcgacaagtaattccg 108