miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 69.9 bits (35), Expect = 9e-12
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 30 tacttgttggagaaatagatgtatccaagatgtattttaagttccaagattcatccattt 89
||||||| ||| ||| |||||||| ||||||||||||| |||| | ||| |||||||||
Sbjct: 103 tacttgtccgaggaatggatgtatcaaagatgtatttta-gttcta-gatacatccattt 46
Query: 90 ttaaccatttctgcgacaagtaattccggac 120
|| |||||||||||||||||| ||||||||
Sbjct: 45 atatccatttctgcgacaagtatttccggac 15
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 25 ggaattacttgttggagaaatagatgtatccaagatgtattttaagttccaagattcatc 84
|||| ||| ||| ||||||||||||||||| || | ||||||| ||||| | ||| |||
Sbjct: 107 ggaaatacctgtcggagaaatagatgtatctaa-acgtatttttagttcta-gatacatt 50
Query: 85 catttttaaccatttctgcgacaagtaattccgga 119
|||||||| |||||||| |||||||||||||||||
Sbjct: 49 catttttacccatttctacgacaagtaattccgga 15
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 93/110 (84%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 11 tactacctcggtctggaattacttgttggagaaatagatgtatccaagatgtattttaag 70
|||| |||| ||| |||| ||||||| |||||||| || |||| | ||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatcta-gatgtattttaat 63
Query: 71 ttccaagattcatccatttttaaccatttctgcgacaagtaattccggac 120
| | |||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 62 t--ctagatacatccatttttatccatttatgcgacaagtaattccggac 15
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 81/94 (86%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 27 aattacttgttggagaaatagatgtatccaagatgtattttaagttccaagattcatcca 86
||||| |||| |||||||| |||||||| | || |||||||| |||| | ||| ||||||
Sbjct: 21 aattatttgtcggagaaatggatgtatcta-gacgtatttta-gttcta-gatacatcca 77
Query: 87 tttttaaccatttctgcgacaagtaattccggac 120
|||||| |||||||||| ||||||| ||||||||
Sbjct: 78 tttttatccatttctgcaacaagtagttccggac 111
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 82 atccatttttaaccatttctgcgacaagtaattccggac 120
||||||||||| |||||| || |||||||||||||||||
Sbjct: 73 atccatttttatccatttgtgtgacaagtaattccggac 111
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 76 agattcatccatttttaaccatttctgcgacaagtaattccggac 120
|||| |||||||||||| ||||| || |||||||||||||||||
Sbjct: 59 agatacatccatttttatacatttatgtgacaagtaattccggac 15
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 76 agattcatccatttttaaccatttctgcgacaagtaattccggac 120
|||| |||||||||||| | |||| ||||||||||||||| ||||
Sbjct: 67 agatacatccatttttatcaatttatgcgacaagtaattctggac 111
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 94 ccatttctgcgacaagtaattccg 117
||||||||||||||||||||||||
Sbjct: 49 ccatttctgcgacaagtaattccg 26
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 catttctgcgacaagtaattcc 116
||||||||||||||||||||||
Sbjct: 76 catttctgcgacaagtaattcc 97
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 85/102 (83%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 10 gtactacctcggtctggaattacttgttggagaaatagatgtatccaagatgtattttaa 69
||||| |||| ||| |||| ||||||| || | ||| |||||||| | |||||||||||
Sbjct: 4 gtactccctccgtccggaaatacttgtcgggggaatggatgtatcta-gatgtatttta- 61
Query: 70 gttccaagattcatccatttttaaccatttctgcgacaagta 111
|||| | ||| |||||||||||| ||||||| |||||||||
Sbjct: 62 gttcta-gatacatccatttttatgcatttctacgacaagta 102
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 76 agattcatccatttttaaccatttctgcgacaagtaattccg 117
|||| ||||||||| || ||||| |||||||||||||||||
Sbjct: 67 agatacatccatttctattcatttttgcgacaagtaattccg 108