miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 85 tccatttctgcgacaagtaattccggacgaagggagt 121
||||||||||||||||||| ||||||||| |||||||
Sbjct: 42 tccatttctgcgacaagtatttccggacggagggagt 6
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 74/86 (86%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 41 gaaatggat-tatctaaacgtgttttagtttta-atgcatccatttt---ccatttctgc 95
||||||||| |||||| |||| |||||||| || || |||||||||| ||||||||||
Sbjct: 35 gaaatggatgtatctagacgtattttagttctagatacatccatttttatccatttctgc 94
Query: 96 gacaagtaattccggacgaagggagt 121
||||||| ||||||||| |||||||
Sbjct: 95 aacaagtagttccggacggagggagt 120
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 85 tccatttctgcgacaagtaattccg 109
|||||||||||||||||||||||||
Sbjct: 50 tccatttctgcgacaagtaattccg 26
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 85 tccatttctgcgacaagtaattccggacgaagggagt 121
||||||| |||||||||||||||||||| |||||||
Sbjct: 42 tccatttatgcgacaagtaattccggacagagggagt 6
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 85 tccatttctgcgacaagtaattccggacgaagggagt 121
|||||||||| |||||||||||||| ||| |||||||
Sbjct: 74 tccatttctgagacaagtaattccgaacggagggagt 110
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 85 tccatttctgcgacaagtaattccggacgaagggagt 121
||||||| || |||||||||||||||||| |||||||
Sbjct: 84 tccatttgtgtgacaagtaattccggacggagggagt 120
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 85 tccatttctgcgacaagtaattccggacgaaggga 119
||||||||| ||||||||||||||| ||| |||||
Sbjct: 42 tccatttctacgacaagtaattccgaacggaggga 8
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 83 tttccatttctgcgacaagtaattccggacgaagggagt 121
||||||||| | |||||||||||||||||| |||||||
Sbjct: 82 tttccattttggtgacaagtaattccggacggagggagt 120
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 87 catttctgcgacaagtaattccggacgaagggagt 121
||||| || |||||||||||||||||| |||||||
Sbjct: 40 catttatgtgacaagtaattccggacggagggagt 6
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 86 ccatttctgcgacaagtaattccgga 111
|||||||| |||||||||||||||||
Sbjct: 40 ccatttctacgacaagtaattccgga 15
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 catttctgcgacaagtaattcc 108
||||||||||||||||||||||
Sbjct: 76 catttctgcgacaagtaattcc 97
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 96 gacaagtaattccggacgaagggagt 121
|||||||| |||||||||||||||||
Sbjct: 31 gacaagtatttccggacgaagggagt 6
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 88 atttctgcgacaagtaattccggacg 113
|||| |||||||||||||||||||||
Sbjct: 39 atttgtgcgacaagtaattccggacg 14
