miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 93.7 bits (47), Expect = 5e-19
Identities = 95/111 (85%)
Strand = Plus / Plus
Query: 7 atatactccctccgttccgaaataagtgactcaaaaatgacttaattttatattaaatta 66
|||||||||||| || || ||||||||||||||||||| ||| || ||| || ||| ||
Sbjct: 2 atatactccctctgtcccaaaataagtgactcaaaaatcactcaactttgtactaacttt 61
Query: 67 aatacaaagttgagtcatttttgagttacttatttttggatggagggagta 117
| ||| ||||||||||| |||||||| ||||||||| ||| ||||||||||
Sbjct: 62 agtacgaagttgagtcacttttgagtcacttattttgggacggagggagta 112
Score = 91.7 bits (46), Expect = 2e-18
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 8 tatactccctccgttccgaaataagtgactcaaaaatgacttaattttatattaaattaa 67
|||||||||||||| || ||||||||||||||||| ||||| || || || |||| | |
Sbjct: 114 tatactccctccgtcccaaaataagtgactcaaaagtgactcaacttcgtactaaagtta 55
Query: 68 atacaaagttgagtcatttttgagttacttatttttggatggagggagta 117
||||||||||||| |||||||||| ||||||||| ||| |||||||||
Sbjct: 54 gtacaaagttgagtgatttttgagtcacttattttgggacagagggagta 5
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 89.7 bits (45), Expect = 8e-18
Identities = 82/93 (88%), Gaps = 1/93 (1%)
Strand = Plus / Minus
Query: 10 tactccctccgttccgaaataagtgactcaaaaatgacttaattttatattaaattaaat 69
|||||||||||| || ||||||||||||||||||||||| | |||| | ||| || | |
Sbjct: 111 tactccctccgtcccaaaataagtgactcaaaaatgactccaatttacactaactt-agt 53
Query: 70 acaaagttgagtcatttttgagttacttatttt 102
||||||||||||||||||||||| |||||||||
Sbjct: 52 acaaagttgagtcatttttgagtcacttatttt 20
Score = 67.9 bits (34), Expect = 3e-11
Identities = 92/110 (83%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 8 tatactccctccgttccgaaataagtgactcaaaaatgacttaattttatattaaattaa 67
|||| |||||| || || ||||||||||||||||||||||| || ||| || ||| |||
Sbjct: 3 tataatccctctgtcccaaaataagtgactcaaaaatgactcaactttgtactaagttag 62
Query: 68 atacaaagttgagtcatttttgagttacttatttttggatggagggagta 117
| ||| | ||||||||||||||| ||||||||| ||| ||||||||||
Sbjct: 63 -tgtaaattggagtcatttttgagtcacttattttgggacggagggagta 111
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 79.8 bits (40), Expect = 8e-15
Identities = 92/108 (85%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 10 tactccctccgttccgaaataagtgactcaaaaatgacttaattttatattaaattaaat 69
|||||||||||| || ||| || |||||||||||||| ||||||||||| |||| | | |
Sbjct: 5 tactccctccgtcccaaaaaaa-tgactcaaaaatgatttaattttatagtaaagttagt 63
Query: 70 acaaagttgagtcatttttgagttacttatttttggatggagggagta 117
|||||||| |||||||| ||| ||||||||| ||| ||||||||||
Sbjct: 64 gtaaagttgactcatttttcagtcacttattttgggacggagggagta 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 10 tactccctccgttccgaaataagtgactcaaaaatga 46
|||||||||||| || |||||||||||| ||||||||
Sbjct: 111 tactccctccgtcccaaaataagtgactgaaaaatga 75
>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
Length = 116
Score = 69.9 bits (35), Expect = 8e-12
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 8 tatactccctccgttccgaaataagtgactcaaaaatgacttaattttatattaaattaa 67
||||||||||||||||||| |||| ||| |||||||| || |||||||| ||| || |
Sbjct: 114 tatactccctccgttccgagataaatgattcaaaaataacccgattttatactaatttta 55
Query: 68 atacaaagttgagtcatttttgagttacttatttt 102
|| |||||| |||| ||||||||| |||||||||
Sbjct: 54 gtataaagttaagtcgtttttgagtcacttatttt 20
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 7 atatactccctccgttccgaaataagtgactcaaaaatgacttaattttatattaaa 63
|||||||| |||||| | |||||||||||||||||| ||||||| |||||| ||||
Sbjct: 2 atatactctctccgtctcaaaataagtgactcaaaaacgacttaactttatactaaa 58
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 8 tatactccctccgttccgaaataagtgactcaa 40
|||||||||||||| ||||||||||||||||||
Sbjct: 105 tatactccctccgtcccgaaataagtgactcaa 73
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 tatactccctccgttccgaaataagtgactcaaa 41
||||||||||||||||| ||||||||| ||||||
Sbjct: 3 tatactccctccgttccaaaataagtgtctcaaa 36
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 8 tatactccctccgttccgaaataagtgactcaa 40
|||||||||||||| || |||||||||||||||
Sbjct: 102 tatactccctccgtcccaaaataagtgactcaa 70
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 71 caaagttgagtcatttttgagttacttatttt 102
|||||||||||| ||||||||| |||||||||
Sbjct: 50 caaagttgagtcgtttttgagtcacttatttt 19
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 26 aaataagtgactcaaaaatgacttaattttatattaaattaaatacaaagttgagtca 83
|||||||||||||||||| |||| || ||| | ||| || | |||||||||||||||
Sbjct: 20 aaataagtgactcaaaaacgactcaactttgcactaactttagtacaaagttgagtca 77
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 atactccctccgttccgaaataagtgactcaa 40
||||||||||||| || |||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgactcaa 35
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 9 atactccctccgttccgaaataagtgactca 39
|||||||||||||||| ||||||||| ||||
Sbjct: 131 atactccctccgttccaaaataagtgtctca 101
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 tatactccctccgttccgaaataagtg 34
||||||||||||||||| |||||||||
Sbjct: 3 tatactccctccgttccaaaataagtg 29
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 aatatactccctccgttccgaaataagtgactcaa 40
||||||||||||| || || |||||||||||||||
Sbjct: 1 aatatactccctctgtcccaaaataagtgactcaa 35
>RF01058;MIR806;AACV01016604.1/24733-24975 39947:Oryza sativa
Japonica Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 97 tatttttggatggagggagtaa 118
||||||||||||||||||||||
Sbjct: 22 tatttttggatggagggagtaa 1
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 7 atatactccctccgttccgaaataagtgactcaa 40
||||||||||||||| || ||||||||| |||||
Sbjct: 104 atatactccctccgtcccaaaataagtgtctcaa 71
