miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 131 bits (66), Expect = 3e-30
Identities = 105/118 (88%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||||||||||| ||||||||||||| ||| ||| |||||| ||||||||||||||||
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttattttagtt 61
Query: 76 atagatacattcattttattcatttctaggacaagtattttcggacgcagggagtatt 133
|||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 60 atagatacatctattatattcatttctaggacaagtatttctggacggagggagtatt 3
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgttctagaaa 49
||||||||||||||| ||||||||||| |||||||
Sbjct: 4 atactccctccgtccagaaatacttgtcctagaaa 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 93 attcatttctaggacaagtattttcggacgcagggagta 131
|||||||| |||||||||||||| || ||| ||||||||
Sbjct: 82 attcatttttaggacaagtatttccgaacggagggagta 120
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 129 bits (65), Expect = 1e-29
Identities = 104/117 (88%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagtt 61
Query: 76 atagatacattcattttattcatttctaggacaagtattttcggacgcagggagtat 132
|||||||||| || | ||| ||||| |||||||||||||| |||||| |||||||||
Sbjct: 60 atagatacatccaatatatccatttttaggacaagtatttccggacggagggagtat 4
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgt 41
|||||||||||||||||||||||||||
Sbjct: 4 atactccctccgtccggaaatacttgt 30
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 93 attcatttctaggacaagtattttcggacgcagggagta 131
|||||| |||||||||||||||| |||||| ||||||||
Sbjct: 82 attcatctctaggacaagtatttccggacggagggagta 120
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 127 bits (64), Expect = 4e-29
Identities = 103/116 (88%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 120 tactccctccgtctgaaaatacttgccctagaaatggttgtatgtagacttattttagtt 61
Query: 76 atagatacattcattttattcatttctaggacaagtattttcggacgcagggagta 131
|||||||||| |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 60 atagatacatcaattttattcatttctaggacaagtatttgcggacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgttctagaaa 49
||||||||||||||| |||||||||| |||||||
Sbjct: 5 tactccctccgtccgcaaatacttgtcctagaaa 38
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 96 catttctaggacaagtattttcggacgcagggagta 131
|||||||||| ||||||||||| |||| ||||||||
Sbjct: 85 catttctagggcaagtattttcagacggagggagta 120
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 127 bits (64), Expect = 4e-29
Identities = 103/116 (88%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||||||||||||||||||||||||||||| | || ||| ||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgttctaaggatgaatatatctagacttattttagtt 61
Query: 76 atagatacattcattttattcatttctaggacaagtattttcggacgcagggagta 131
|||||||||| |||| ||||||||||| |||||||||||| |||||| ||||||||
Sbjct: 60 atagatacatccattatattcatttctgggacaagtatttccggacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgt 30
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 121 bits (61), Expect = 3e-27
Identities = 106/121 (87%)
Strand = Plus / Plus
Query: 12 tatatactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttatttt 71
|||||||||||||| ||||||||||||||| || ||| |||||| |||| |||||||
Sbjct: 1 tatatactccctccatccggaaatacttgtcttaaaaatagatgtatgtagaattatttt 60
Query: 72 agttatagatacattcattttattcatttctaggacaagtattttcggacgcagggagta 131
||||||| ||||| ||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 61 agttataaatacacccattttatttatttctaggacaagtattttcggacggatggagta 120
Query: 132 t 132
|
Sbjct: 121 t 121
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 99.6 bits (50), Expect = 1e-20
Identities = 102/118 (86%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagt 74
|||||||| |||||||||||||| ||| | |||| |||||| |||||||||||||||
Sbjct: 120 atactccccccgtccggaaatacctgtcttcgaaatgaatgtatctagacttattttagt 61
Query: 75 tatagatacattcattttattcatttctaggacaagtattttcggacgcagggagtat 132
|||| |||||| ||||||||| || | |||||||||||||||| |||| |||||||||
Sbjct: 60 tatacatacat-cattttatttatctttaggacaagtattttctgacggagggagtat 4
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 97.6 bits (49), Expect = 4e-20
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 12 tatatactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttatttt 71
||||||||||| |||||||||||||||||| ||| | | |||||| || | |||||||
Sbjct: 124 tatatactccccccgtccggaaatacttgtcctaaagatgaatgtatctaaatttatttt 65
Query: 72 agttatagatacattcattttattcatttctaggacaagtattttcgga 120
|||||| ||||||| |||| ||| |||||||||||||| ||||||||||
Sbjct: 64 agttatggatacatccattatatccatttctaggacaaatattttcgga 16
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 95.6 bits (48), Expect = 2e-19
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
||||||||||||| |||||||||| ||| ||| ||| || ||||||||||||||||
Sbjct: 5 tactccctccgtctaaaaatacttgtcctaaaaatggatgaatctagacttattttagtt 64
Query: 76 atagatacattcattttattcatttctaggacaagtattttcggacgcagggagta 131
|||||||||| |||| |||| |||| |||| ||||||||| |||||| ||||||||
Sbjct: 65 atagatacatccattatatttatttttaggtcaagtatttccggacggagggagta 120
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttg 40
|||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttg 96
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 95.6 bits (48), Expect = 2e-19
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||||||| ||| || |||||||||| ||| || |||||| ||||||||||||| ||
Sbjct: 5 tactcccttcgttcgaaaatacttgtcctaaaagtagatgtatctagacttattttactt 64
Query: 76 atagatacattcattttattcatttctaggacaagtattttcggacgcagggagta 131
|||||||||| |||||||| ||||| || ||||||||||| |||||| ||||||||
Sbjct: 65 atagatacatccattttatacatttttatgacaagtatttccggacggagggagta 120
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 102 taggacaagtattttcggacgcagggagta 131
||||||||||||||||| ||| ||||||||
Sbjct: 34 taggacaagtattttcgaacgaagggagta 5
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 87.7 bits (44), Expect = 4e-17
Identities = 102/120 (85%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagt 74
||||||||||||||||||||||||||| | || |||||| |||| |||||||||
Sbjct: 122 atactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagt 63
Query: 75 tatagatacattcatttt-attcatttctaggacaagtattttcggacgcagggagtatt 133
| ||||||||| |||||| || |||||||| |||||||||||| ||||| ||||||||||
Sbjct: 62 tctagatacatccatttttatgcatttctacgacaagtattttgggacggagggagtatt 3
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 gacaagtattttcggacgcagggagtatta 134
||||||||||| |||||| |||||||||||
Sbjct: 95 gacaagtatttccggacggagggagtatta 124
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 87.7 bits (44), Expect = 4e-17
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||| ||||||||||||||||||||| ||| | | |||||| |||||||||| || ||
Sbjct: 120 tactacctccgtccggaaatacttgtcctacagatgaatgtatctagacttattctaatt 61
Query: 76 atagatacattcattttattcatttctaggacaagtattttcggacgcagggagta 131
||||||||| |||| ||| |||| ||||||||||||||||||||| | ||||||
Sbjct: 60 gtagatacatccattatatgtatttttaggacaagtattttcggacggatggagta 5
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 83.8 bits (42), Expect = 6e-16
Identities = 100/118 (84%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||||||||||||||||||||||||| | || |||||| |||| ||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 64
Query: 76 atagatacattcatttt-attcatttctaggacaagtattttcggacgcagggagtat 132
||||||||| |||||| || |||||||| |||||||||||| ||||| |||||||||
Sbjct: 65 ctagatacatccatttttatgcatttctacgacaagtattttgggacggagggagtat 122
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 103/120 (85%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagt 74
||||| ||||||| |||||||||||||| |||| | |||||| |||| |||||||| |
Sbjct: 4 atactacctccgttcggaaatacttgttttagagatgaatgtatctagatttattttaat 63
Query: 75 tatagatacattca-ttttattcatttctaggac-aagtattttcggacgcagggagtat 132
||||||||| |||| || ||| |||||||||||| ||||||||| ||||| |||||||||
Sbjct: 64 tatagatac-ttcagttatatccatttctaggacaaagtattttgggacggagggagtat 122
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
||||||||||||||| |||||||||| ||||| | |||||| ||||| ||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtctgagaaattgatgtatctagacgtattttagtt 64
Query: 76 atagatacattcatttta 93
|| ||||||||||||||
Sbjct: 65 ctaaatacattcatttta 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 105 gacaagtattttcggacgcagggagta 131
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 101/121 (83%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 14 tatactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttag 73
|||||||||||||||||||| || |||| |||||| |||||| ||||| ||||||||
Sbjct: 123 tatactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttag 64
Query: 74 ttatagatacattcattt-tattcatttctaggacaagtattttcggacgcagggagtat 132
|| ||||||||| ||||| | | ||||| | |||||||| || |||||| |||||||||
Sbjct: 63 ttctagatacatccatttctttccattttgacgacaagtacttccggacggagggagtat 4
Query: 133 t 133
|
Sbjct: 3 t 3
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgt 41
||||||||||||||||||| |||||||
Sbjct: 4 atactccctccgtccggaagtacttgt 30
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 67.9 bits (34), Expect = 4e-11
Identities = 98/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
||||||||| |||||||||||||||| || || ||||| ||||| ||||||||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagtt 62
Query: 76 atagatacattcatttt-attcatttctaggacaagtattttcggacgcagggagtat 132
||||||||| |||||| || ||||||| ||||||||||| ||||| |||||||||
Sbjct: 61 ctagatacatccatttttatgcatttctccgacaagtatttcaggacggagggagtat 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatacttgt 41
|||||||||||||||| |||||||||||
Sbjct: 3 tatactccctccgtcctgaaatacttgt 30
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 141
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaa 49
||||||||||||||||||||||||||||||||||
Sbjct: 137 tactccctccgtccggaaatacttgttctagaaa 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 80/97 (82%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagt 74
|||||||||| || | |||||||||| ||||||| |||||| |||| ||||||||||
Sbjct: 4 atactccctctgttcataaatacttgtcctagaaatagatgtatctagatttattttagt 63
Query: 75 tat--agatacattcattttattcatttctaggacaa 109
||| |||||| | |||||| | ||||||||| ||||
Sbjct: 64 tatggagatacgtccattttgtacatttctagaacaa 100
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 53 atgtatttagacttattttagttatagatacat-tcattttattcatttctaggacaagt 111
|||||| ||||| |||||||||| ||||||||| || ||||| ||| || | |||||||
Sbjct: 52 atgtatctagacatattttagttctagatacatctctttttagtcactttgatgacaagt 111
Query: 112 attttcggacgcagggagtat 132
||||||||||| |||||||||
Sbjct: 112 attttcggacggagggagtat 132
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgt 41
|||||||||||||||||||||||||||
Sbjct: 4 atactccctccgtccggaaatacttgt 30
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgt 41
|||||||||||||||| ||||||||||
Sbjct: 132 atactccctccgtccgaaaatacttgt 106
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 53 atgtatttagacttattttagttatagatacattcatttt-attcatttctaggacaagt 111
||||||||| || |||||||||| || ||||||| ||||| || ||||| | |||||||
Sbjct: 52 atgtatttaaacatattttagttctaaatacatttatttttatccattttgatgacaagt 111
Query: 112 attttcggacgcagggagtat 132
||||||||||| |||||||||
Sbjct: 112 attttcggacggagggagtat 132
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 105 gacaagtattttcggacgcagggagtatt 133
|||||||||||||||||| ||||||||||
Sbjct: 31 gacaagtattttcggacgaagggagtatt 3
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 atatactccctccgtccggaaatacttgt 41
|||||||||||||||||| ||||||||||
Sbjct: 134 atatactccctccgtccgaaaatacttgt 106
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 63.9 bits (32), Expect = 6e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 53 atgtatttagacttattttagttatagatacat-tcattttattcatttctaggacaagt 111
||||||||||| |||||||||| |||||| || || |||| ||||||| | |||||||
Sbjct: 51 atgtatttagatgtattttagttctagatatatctctttttgttcattttgatgacaagt 110
Query: 112 attttcggacgcagggagta 131
||||||||||| ||||||||
Sbjct: 111 attttcggacggagggagta 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||| ||||||||||
Sbjct: 130 tactccctccgtccgaaaatacttgt 105
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 89/104 (85%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatacttgttctagaaaatc-atgtatttagacttatttta 72
|||||||| ||||||||||||||||||| | | | ||| |||||||||||| |||||||
Sbjct: 3 tatactccttccgtccggaaatacttgt-cgaaagaatggatgtatttagacatatttta 61
Query: 73 gttatagatacattcattt-tattcatttctaggacaagtattt 115
||| ||||| ||| ||||| ||||||||| | |||||||||||
Sbjct: 62 gttttagatgcatccatttatattcatttttgcgacaagtattt 105
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 99/120 (82%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttag 73
||||||||||||||||| || || |||| ||||| |||||| ||||| ||||||||
Sbjct: 3 tatactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttag 62
Query: 74 ttatagatacattca-ttttattcatttctaggacaagtattttcggacgcagggagtat 132
|| ||||||||| || |||||| ||||||| ||||||| || |||||| |||||||||
Sbjct: 63 ttctagatacatccatttttatccatttctgcaacaagtagttccggacggagggagtat 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtt 42
||||||||||||||||||| ||||||||
Sbjct: 122 atactccctccgtccggaactacttgtt 95
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 61.9 bits (31), Expect = 2e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 66 tattttagttatagatacattcattt-tattcatttctaggacaagtattttcggacgca 124
|||||||||| ||||||||| ||||| ||| ||||||| ||||||||||| |||||| |
Sbjct: 71 tattttagttctagatacatccatttatatccatttctgcgacaagtatttccggacgga 12
Query: 125 gggagta 131
|||||||
Sbjct: 11 gggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgt 30
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 104 ggacaagtattttcggacgcagggagta 131
||||||||||||||||||| ||||||||
Sbjct: 95 ggacaagtattttcggacggagggagta 122
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 66 tattttagttatagatacattca-ttttattcatttctaggacaagtattttcggacgca 124
|||||||||| |||||||||||| |||||| ||||| | ||||||||||||||||| |
Sbjct: 55 tattttagttctagatacattcatttttatccattttgatgacaagtattttcggacaga 114
Query: 125 gggagta 131
|||||||
Sbjct: 115 gggagta 121
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagt 74
||||||||| ||||||||||||||||| | | || |||||| |||| |||||||||
Sbjct: 4 atactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagt 63
Query: 75 tatagatacattcattt-tattcattt 100
||||||||||| ||||| |||||||||
Sbjct: 64 tatagatacatccatttctattcattt 90
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 13 atatactccctccgtccggaaatacttgt 41
|||||||||||||||||||||||||||||
Sbjct: 124 atatactccctccgtccggaaatacttgt 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 93 attcatttctaggacaagtattttcggacgcagggagtat 132
|||||||||| ||||||||||| |||||| |||||||||
Sbjct: 83 attcatttctccgacaagtatttccggacggagggagtat 122
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
||||||| |||||||||||||||||| ||| || |||||| |||| ||||||||||
Sbjct: 5 tactcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 76 atagatacattcatttt 92
||||||||| ||||||
Sbjct: 65 ctagatacatccatttt 81
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 14 tatactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||||
Sbjct: 133 tatactccctccgtccggaaatacttgt 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgt 41
|||||||||||||||||||||| ||||
Sbjct: 4 atactccctccgtccggaaatatttgt 30
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 98/120 (81%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttag 73
||||||||||| ||||||||||| |||| ||| || |||||| |||| ||||||||
Sbjct: 3 tatactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttag 62
Query: 74 ttatagatacattca-ttttattcatttctaggacaagtattttcggacgcagggagtat 132
|| |||||| || || |||||| ||||| | |||||||| || |||||| |||||||||
Sbjct: 63 ttctagatatatccatttttatccatttgtgtgacaagtaattccggacggagggagtat 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgt 41
||||||||||||||||||| |||||||
Sbjct: 122 atactccctccgtccggaattacttgt 96
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 12 tatatactccctccgtccggaaatacttgt 41
||||||||||||||||||| ||||||||||
Sbjct: 135 tatatactccctccgtccgaaaatacttgt 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 105 gacaagtattttcggacgcagggagtat 132
|||||||||||||||||| |||||||||
Sbjct: 105 gacaagtattttcggacggagggagtat 132
Score = 46.1 bits (23), Expect = 1e-04
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 53 atgtatttagacttattttagttatagatacat-tcattttattcatttctaggacaagt 111
|||||| |||| |||||||||| ||| ||||| || |||||| ||||| | |||||||
Sbjct: 84 atgtatctagatatattttagttctaggtacatctctttttatccattttgatgacaagt 25
Query: 112 attttcggacg 122
|||||||||||
Sbjct: 24 attttcggacg 14
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 131 tactccctccgtccggaaatacttgt 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 105 gacaagtattttcggacgcagggagta 131
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 89 ttttattcatttctaggacaagtattttcggacgcagggagta 131
|||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 89 ttttattcattttgatgacaagtatttccggacggagggagta 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgt 30
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 132 tactccctccgtccggaaatacttgt 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 67/80 (83%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 53 atgtatttagacttattttagttatagatacattcatt-ttattcatttctaggacaagt 111
|||||| |||| |||||||||| |||||||||| || |||| ||||| | |||||||
Sbjct: 84 atgtatctagatgtattttagttctagatacatttcttattatccattttgatgacaagt 25
Query: 112 attttcggacgcagggagta 131
||||||| ||| ||||||||
Sbjct: 24 attttcgaacggagggagta 5
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 50.1 bits (25), Expect = 8e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 53 atgtatttagacttattttagttatagatacat-tcattttattcatttctaggacaagt 111
|||||| |||| |||||||||| || |||||| || |||| ||||| | | |||||||
Sbjct: 63 atgtatctagatgtattttagttctacatacatctctttttgttcatattgatgacaagt 122
Query: 112 attttcggacgcagggagtat 132
||||||||||| |||||||||
Sbjct: 123 attttcggacggagggagtat 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgt 41
|||||||||||||||| ||||||||||
Sbjct: 143 atactccctccgtccgaaaatacttgt 117
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||||||||||| ||||| ||||||| ||||| |||||| ||||| ||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagtt 52
Query: 76 atagatacattcatttt 92
|||||| || ||||||
Sbjct: 51 ctagatagatccatttt 35
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagacttattttagtt 75
|||||||||| |||| ||||||||| ||| || |||||| |||| ||||||||||
Sbjct: 121 tactccctccatccgaaaatacttggcataggaatgtatgtatctagatatattttagtt 62
Query: 76 atagatacattcatttt 92
||||||||||||||||
Sbjct: 61 ctagatacattcatttt 45
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 96 catttctaggacaagtattttcggacgcagggagta 131
|||||| | |||||||||||||||||| ||||||||
Sbjct: 76 catttcaatgacaagtattttcggacggagggagta 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||| ||||||||||
Sbjct: 111 tactccctccgtccgaaaatacttgt 86
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 atgtatttagacttattttagttatagatacattcatttt 92
|||||||||||| |||||||||| || |||||| ||||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatccatttt 45
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 atgtatttagacttattttagttatagatacattcatttt 92
|||||| |||| |||||||||||||||||||| ||||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatccatttt 35
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 67/80 (83%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 53 atgtatttagacttattttagttatagatacattcatttt-attcatttctaggacaagt 111
|||||| |||| ||||||| || ||||||||||| |||| || ||||| | |||||||
Sbjct: 84 atgtatctagatgtattttaattctagatacattcttttttatccattttgatgacaagt 25
Query: 112 attttcggacgcagggagta 131
||||||||||| || |||||
Sbjct: 24 attttcggacgaagcgagta 5
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 82/99 (82%), Gaps = 2/99 (2%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgttctagaaaatcatgtatttagactta-ttttagt 74
|||||||||| ||||||||||| ||| ||||| |||||| || || || |||||||
Sbjct: 121 tactccctccatccggaaatacctgtcggagaaatagatgtatctaaacgtatttttagt 62
Query: 75 tatagatacattca-ttttattcatttctaggacaagta 112
| |||||||||||| ||||| |||||||| ||||||||
Sbjct: 61 tctagatacattcatttttacccatttctacgacaagta 23
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 105 gacaagtattttcggacgcagggagta 131
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgt 30
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 53 atgtatttagacttattttagttatagatacattcattt 91
|||||| |||| |||||||| || |||||||||||||||
Sbjct: 74 atgtatctagatttattttaattctagatacattcattt 36
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 53 atgtatttagacttattttagttatagatacattcattt 91
|||||| |||| |||||||||||||||||||| |||||
Sbjct: 42 atgtatctagatgtattttagttatagatacatccattt 80
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 53 atgtatttagacttattttagttatagatacattcatttt-attcatttctaggacaagt 111
|||||| |||| |||||||||| |||||||||| ||||| | ||||||| |||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacatttatttttaggcatttctccgacaagt 20
Query: 112 attttcggacgcagggagt 130
|||| || ||| |||||||
Sbjct: 19 atttccgaacggagggagt 1
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgt 41
||||||||||||||||||| |||||||
Sbjct: 4 atactccctccgtccggaattacttgt 30
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 tattttagttatagatacattcattt 91
|||||||||| |||||||||||||||
Sbjct: 55 tattttagttctagatacattcattt 80
>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 66 tattttagttatagatacattcattttattcatttctaggacaagtattttcggacgcag 125
|||||||||| || ||| ||| |||| ||||||| | |||||||||||||||||| ||
Sbjct: 70 tattttagttttaaatatattttttttgttcattttaatgacaagtattttcggacggag 11
Query: 126 ggagta 131
|||||
Sbjct: 10 agagta 5
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgt 41
|||| |||||||||||||||||||||
Sbjct: 5 tacttcctccgtccggaaatacttgt 30
>RF00906;MIR1122;EF104384.1/242-122 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||| ||||||
Sbjct: 118 tactccctccgtccggaaaaacttgt 93
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
|||||||||||||||||| |||||||
Sbjct: 121 tactccctccgtccggaattacttgt 96
