miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 119

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
           |||||||||||||||||||| ||||||| ||||| ||||  |||||| ||||||||||||
Sbjct: 10  cctccgttcctaaatataagtctttttagagattacactatggactacatacggagcaaa 69

             
Query: 111 at 112
           ||
Sbjct: 70  at 71



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 51  cctccgttcctaaatataagcctttttaaagatt 84
           |||||||||||||||||||| | ||||| |||||
Sbjct: 110 cctccgttcctaaatataagtccttttagagatt 77




>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
          Length = 166

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 130/157 (82%), Gaps = 3/157 (1%)
 Strand = Plus / Minus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggg-gactatatacggagcaa 109
           |||||||||||||||||||| ||||||| ||||||| || |  ||||| |||||||||||
Sbjct: 159 cctccgttcctaaatataagtctttttagagatttcgctagacgactacatacggagcaa 100

                                                                       
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttttcctag-g 168
           ||| ||  |||| ||| | |||  | |||||||||||| ||| || ||| | | |||| |
Sbjct: 99  aatgagtgaatctatattctaaaatatgtctatatacatccgaatgtag-tctactagtg 41

                                                
Query: 169 aaaactcttaaaaaacttatatttaggaacagaggga 205
           ||| |||| |||| |||||||||||||||| ||||||
Sbjct: 40  aaacctctaaaaagacttatatttaggaacggaggga 4



 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
          |||||||||||||||||||| ||||||| || |||||||
Sbjct: 6  cctccgttcctaaatataagtctttttagaggtttcact 44



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 168 gaaaactcttaaaaaacttatatttaggaacagaggga 205
           |||| |||| |||| |||||||||||||||| ||||||
Sbjct: 124 gaaatctctaaaaagacttatatttaggaacggaggga 161




>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 167

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
           |||||||||||||||||||| | ||||| | ||||||||   ||||| ||||||||||||
Sbjct: 158 cctccgttcctaaatataagaccttttacaaatttcactatagactacatacggagcaaa 99

             
Query: 111 at 112
           ||
Sbjct: 98  at 97



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
          |||||||||||||||||||| | ||||| |||| |||||
Sbjct: 7  cctccgttcctaaatataagaccttttagagatctcact 45




>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
          Length = 165

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
           |||||||||||||||||||| || | || ||||||||||  |||||| ||||| ||||||
Sbjct: 156 cctccgttcctaaatataagtctctgtagagatttcactatggactacatacgaagcaaa 97

             
Query: 111 at 112
           ||
Sbjct: 96  at 95



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
          |||||||||||||||||||| |||| || ||||| ||||
Sbjct: 10 cctccgttcctaaatataagtctttgtagagattccact 48




>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
          Length = 165

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 129/157 (82%), Gaps = 4/157 (2%)
 Strand = Plus / Plus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcact-ggggactatatacggagcaa 109
           ||||||||||||||| |||| ||||||| ||||||| ||  ||| ||| ||| |||||||
Sbjct: 8   cctccgttcctaaatgtaagtctttttagagatttctctaaggggctacatatggagcaa 67

                                                                       
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttttcctag-g 168
           ||| ||  ||||  |||| ||| || |||||||||||| |||||| ||| |  ||||| |
Sbjct: 68  aatgagtgaatctgtactctaa-gtatgtctatatacatccgtatgtag-tcccctagtg 125

                                                
Query: 169 aaaactcttaaaaaacttatatttaggaacagaggga 205
           |||  ||| |||| |||||||||||||||| ||||||
Sbjct: 126 aaacttctaaaaagacttatatttaggaacggaggga 162



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 51  cctccgttcctaaatataagcctttttaaagatttcact-ggggactatatacgga 105
           |||||||||||||||||||| ||||||| |  ||||||| |||||||| |||||||
Sbjct: 160 cctccgttcctaaatataagtctttttagaagtttcactaggggactacatacgga 105




>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
          Length = 107

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggggactatatacg 103
           ||||| |||||||||||||| |||| |||||||||||||  |||||| |||||
Sbjct: 10  cctcctttcctaaatataagtctttctaaagatttcactacggactacatacg 62




>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
          Length = 165

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 92/112 (82%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggg-gactatatacggagcaa 109
           |||||||||| ||||||||| | |||||   |||||||| || ||||| |||||||||||
Sbjct: 158 cctccgttccaaaatataagaccttttaggtatttcactaggagactacatacggagcaa 99

                                                               
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttt 161
           ||| ||  |||| ||||| |||  | ||||||| |||| |||||| ||||||
Sbjct: 98  aatgagtgaatctatactctaaaatatgtctatgtacatccgtatgtagttt 47



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 51 cctccgttcctaaatataagcctttttaaagatt 84
          |||||||||||||||||||| | ||||| |||||
Sbjct: 6  cctccgttcctaaatataagaccttttagagatt 39




>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 166

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 92/112 (82%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggg-gactatatacggagcaa 109
           |||||||||| ||||||||| | |||||   |||||||| |  ||||| |||||||||||
Sbjct: 161 cctccgttccaaaatataagaccttttaggtatttcactagaagactacatacggagcaa 102

                                                               
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttt 161
           ||| ||| |||| ||||| |||  | ||||||| |||| |||||| ||||||
Sbjct: 101 aatgagcgaatctatactctaaaatatgtctatgtacatccgtatgtagttt 50



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 51 cctccgttcctaaatataagcctttttaaagatt 84
          |||||||||||||||||||| | ||||| |||||
Sbjct: 9  cctccgttcctaaatataagaccttttagagatt 42




>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 165

 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 51  cctccgttcctaaatataagcctttttaaagatttcact 89
           |||||||||||||||||||| |||| || ||||||||||
Sbjct: 159 cctccgttcctaaatataagtctttgtagagatttcact 121



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 175 cttaaaaaacttatatttaggaacagaggga 205
           ||||||| |||||||||||||||| ||||||
Sbjct: 34  cttaaaagacttatatttaggaacggaggga 4



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
          |||||||||||||||||||| ||||| |  |||||||||
Sbjct: 6  cctccgttcctaaatataagtcttttaagcgatttcact 44




>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
          Length = 167

 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 51  cctccgttcctaaatataagcctttttaaagattt 85
           |||||||||||||||||||| ||||||| ||||||
Sbjct: 161 cctccgttcctaaatataagtctttttagagattt 127



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
           |||| ||||||||||||||| ||||||| |||||  | |  |||||| ||||||||||||
Sbjct: 10  cctctgttcctaaatataagtctttttagagattctaatatggactacatacggagcaaa 69

             
Query: 111 at 112
           ||
Sbjct: 70  at 71



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 173 ctcttaaaaaacttatatttaggaacagaggga 205
           |||| |||| |||||||||||||||||||||||
Sbjct: 40  ctctaaaaagacttatatttaggaacagaggga 8




>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 155

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 174 tcttaaaaaacttatatttaggaacagaggga 205
           |||||||| |||||||||||||||| ||||||
Sbjct: 117 tcttaaaagacttatatttaggaacggaggga 148



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 51  cctccgttcctaaatataagcctttttaaagatttcact 89
           |||||||||||||||||||| ||||| | | ||||||||
Sbjct: 146 cctccgttcctaaatataagtcttttaagatatttcact 108




>RF00906;MIR1122;AACV01021941.1/12785-12674 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 47  actacctccgttcctaaatataagccttttta 78
           |||||||||||||| |||||||||| ||||||
Sbjct: 107 actacctccgttccaaaatataagcattttta 76




>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
           wheat)
          Length = 167

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 51  cctccgttcctaaatataagcctttttaaagatttcact 89
           ||||| |||||||||||||| |||| || ||||||||||
Sbjct: 158 cctccattcctaaatataagtctttgtagagatttcact 120



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
           |||||||||||||||||||| ||||  | |||||||| |  |||| | |||||||| |||
Sbjct: 7   cctccgttcctaaatataagtctttggacagatttcattatggaccacatacggagtaaa 66

             
Query: 111 at 112
           ||
Sbjct: 67  at 68




>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
          subsp. dicoccoides
          Length = 167

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
          |||||||||||||||||||| ||||  | ||||||||||
Sbjct: 10 cctccgttcctaaatataagtctttggagagatttcact 48



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 51  cctccgttcctaaatataagcctttttaaagatttcactggggactatatacgga 105
           |||||||||||||||||||| |||  || | ||||||||| |||| | |||||||
Sbjct: 160 cctccgttcctaaatataagtcttcgtagatatttcactgtggaccacatacgga 106




>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 142

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 51  cctccgttcctaaatataagcctttttaaagatt 84
           |||||||||||||||||||| ||||  |||||||
Sbjct: 133 cctccgttcctaaatataagtctttcgaaagatt 100




>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
           Japonica Group
          Length = 80

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 184 cttatatttaggaacagaggga 205
           ||||||||||||||||||||||
Sbjct: 29  cttatatttaggaacagaggga 8