miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 75.8 bits (38), Expect = 2e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
|||||||||||||||||||| ||||||| ||||| |||| |||||| ||||||||||||
Sbjct: 10 cctccgttcctaaatataagtctttttagagattacactatggactacatacggagcaaa 69
Query: 111 at 112
||
Sbjct: 70 at 71
Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatt 84
|||||||||||||||||||| | ||||| |||||
Sbjct: 110 cctccgttcctaaatataagtccttttagagatt 77
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 73.8 bits (37), Expect = 1e-12
Identities = 130/157 (82%), Gaps = 3/157 (1%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggg-gactatatacggagcaa 109
|||||||||||||||||||| ||||||| ||||||| || | ||||| |||||||||||
Sbjct: 159 cctccgttcctaaatataagtctttttagagatttcgctagacgactacatacggagcaa 100
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttttcctag-g 168
||| || |||| ||| | ||| | |||||||||||| ||| || ||| | | |||| |
Sbjct: 99 aatgagtgaatctatattctaaaatatgtctatatacatccgaatgtag-tctactagtg 41
Query: 169 aaaactcttaaaaaacttatatttaggaacagaggga 205
||| |||| |||| |||||||||||||||| ||||||
Sbjct: 40 aaacctctaaaaagacttatatttaggaacggaggga 4
Score = 54.0 bits (27), Expect = 9e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
|||||||||||||||||||| ||||||| || |||||||
Sbjct: 6 cctccgttcctaaatataagtctttttagaggtttcact 44
Score = 44.1 bits (22), Expect = 9e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 168 gaaaactcttaaaaaacttatatttaggaacagaggga 205
|||| |||| |||| |||||||||||||||| ||||||
Sbjct: 124 gaaatctctaaaaagacttatatttaggaacggaggga 161
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 60.0 bits (30), Expect = 1e-08
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
|||||||||||||||||||| | ||||| | |||||||| ||||| ||||||||||||
Sbjct: 158 cctccgttcctaaatataagaccttttacaaatttcactatagactacatacggagcaaa 99
Query: 111 at 112
||
Sbjct: 98 at 97
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
|||||||||||||||||||| | ||||| |||| |||||
Sbjct: 7 cctccgttcctaaatataagaccttttagagatctcact 45
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 60.0 bits (30), Expect = 1e-08
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
|||||||||||||||||||| || | || |||||||||| |||||| ||||| ||||||
Sbjct: 156 cctccgttcctaaatataagtctctgtagagatttcactatggactacatacgaagcaaa 97
Query: 111 at 112
||
Sbjct: 96 at 95
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
|||||||||||||||||||| |||| || ||||| ||||
Sbjct: 10 cctccgttcctaaatataagtctttgtagagattccact 48
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 58.0 bits (29), Expect = 6e-08
Identities = 129/157 (82%), Gaps = 4/157 (2%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact-ggggactatatacggagcaa 109
||||||||||||||| |||| ||||||| ||||||| || ||| ||| ||| |||||||
Sbjct: 8 cctccgttcctaaatgtaagtctttttagagatttctctaaggggctacatatggagcaa 67
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttttcctag-g 168
||| || |||| |||| ||| || |||||||||||| |||||| ||| | ||||| |
Sbjct: 68 aatgagtgaatctgtactctaa-gtatgtctatatacatccgtatgtag-tcccctagtg 125
Query: 169 aaaactcttaaaaaacttatatttaggaacagaggga 205
||| ||| |||| |||||||||||||||| ||||||
Sbjct: 126 aaacttctaaaaagacttatatttaggaacggaggga 162
Score = 56.0 bits (28), Expect = 2e-07
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact-ggggactatatacgga 105
|||||||||||||||||||| ||||||| | ||||||| |||||||| |||||||
Sbjct: 160 cctccgttcctaaatataagtctttttagaagtttcactaggggactacatacgga 105
>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
Length = 107
Score = 58.0 bits (29), Expect = 6e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggggactatatacg 103
||||| |||||||||||||| |||| ||||||||||||| |||||| |||||
Sbjct: 10 cctcctttcctaaatataagtctttctaaagatttcactacggactacatacg 62
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 56.0 bits (28), Expect = 2e-07
Identities = 92/112 (82%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggg-gactatatacggagcaa 109
|||||||||| ||||||||| | ||||| |||||||| || ||||| |||||||||||
Sbjct: 158 cctccgttccaaaatataagaccttttaggtatttcactaggagactacatacggagcaa 99
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttt 161
||| || |||| ||||| ||| | ||||||| |||| |||||| ||||||
Sbjct: 98 aatgagtgaatctatactctaaaatatgtctatgtacatccgtatgtagttt 47
Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatt 84
|||||||||||||||||||| | ||||| |||||
Sbjct: 6 cctccgttcctaaatataagaccttttagagatt 39
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 56.0 bits (28), Expect = 2e-07
Identities = 92/112 (82%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggg-gactatatacggagcaa 109
|||||||||| ||||||||| | ||||| |||||||| | ||||| |||||||||||
Sbjct: 161 cctccgttccaaaatataagaccttttaggtatttcactagaagactacatacggagcaa 102
Query: 110 aataagcaaatccatactttaatgtgtgtctatatacacccgtatatagttt 161
||| ||| |||| ||||| ||| | ||||||| |||| |||||| ||||||
Sbjct: 101 aatgagcgaatctatactctaaaatatgtctatgtacatccgtatgtagttt 50
Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatt 84
|||||||||||||||||||| | ||||| |||||
Sbjct: 9 cctccgttcctaaatataagaccttttagagatt 42
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 54.0 bits (27), Expect = 9e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
|||||||||||||||||||| |||| || ||||||||||
Sbjct: 159 cctccgttcctaaatataagtctttgtagagatttcact 121
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 175 cttaaaaaacttatatttaggaacagaggga 205
||||||| |||||||||||||||| ||||||
Sbjct: 34 cttaaaagacttatatttaggaacggaggga 4
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
|||||||||||||||||||| ||||| | |||||||||
Sbjct: 6 cctccgttcctaaatataagtcttttaagcgatttcact 44
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 54.0 bits (27), Expect = 9e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagattt 85
|||||||||||||||||||| ||||||| ||||||
Sbjct: 161 cctccgttcctaaatataagtctttttagagattt 127
Score = 52.0 bits (26), Expect = 4e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
|||| ||||||||||||||| ||||||| ||||| | | |||||| ||||||||||||
Sbjct: 10 cctctgttcctaaatataagtctttttagagattctaatatggactacatacggagcaaa 69
Query: 111 at 112
||
Sbjct: 70 at 71
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 173 ctcttaaaaaacttatatttaggaacagaggga 205
|||| |||| |||||||||||||||||||||||
Sbjct: 40 ctctaaaaagacttatatttaggaacagaggga 8
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 174 tcttaaaaaacttatatttaggaacagaggga 205
|||||||| |||||||||||||||| ||||||
Sbjct: 117 tcttaaaagacttatatttaggaacggaggga 148
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
|||||||||||||||||||| ||||| | | ||||||||
Sbjct: 146 cctccgttcctaaatataagtcttttaagatatttcact 108
>RF00906;MIR1122;AACV01021941.1/12785-12674 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 47 actacctccgttcctaaatataagccttttta 78
|||||||||||||| |||||||||| ||||||
Sbjct: 107 actacctccgttccaaaatataagcattttta 76
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
||||| |||||||||||||| |||| || ||||||||||
Sbjct: 158 cctccattcctaaatataagtctttgtagagatttcact 120
Score = 44.1 bits (22), Expect = 9e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggggactatatacggagcaaa 110
|||||||||||||||||||| |||| | |||||||| | |||| | |||||||| |||
Sbjct: 7 cctccgttcctaaatataagtctttggacagatttcattatggaccacatacggagtaaa 66
Query: 111 at 112
||
Sbjct: 67 at 68
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcact 89
|||||||||||||||||||| |||| | ||||||||||
Sbjct: 10 cctccgttcctaaatataagtctttggagagatttcact 48
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatttcactggggactatatacgga 105
|||||||||||||||||||| ||| || | ||||||||| |||| | |||||||
Sbjct: 160 cctccgttcctaaatataagtcttcgtagatatttcactgtggaccacatacgga 106
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 51 cctccgttcctaaatataagcctttttaaagatt 84
|||||||||||||||||||| |||| |||||||
Sbjct: 133 cctccgttcctaaatataagtctttcgaaagatt 100
>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
Japonica Group
Length = 80
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 184 cttatatttaggaacagaggga 205
||||||||||||||||||||||
Sbjct: 29 cttatatttaggaacagaggga 8