miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 133 bits (67), Expect = 1e-30
Identities = 136/158 (86%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtcctttaaag-attccaccagggnactacatacgg 156
||||||||| ||||| ||||||||| ||||| | | ||| ||| ||| |||||||||||
Sbjct: 163 tactccctccgttccaaaatataagaccttttaggtatttcactaggagactacatacgg 104
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
|||||||||||| |||||| |||||||| ||| ||| |||||||||||||||||||| ||
Sbjct: 103 agcaaaatgagtgaatctatactctaaaatatgtctatgtacatccgtatgtagtttata 44
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
|| ||| ||||||| | | ||||||||||||||||||
Sbjct: 43 gtacaatctctaaaaggtcttatatttaggaacggagg 6
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtccttt 128
||||||||| ||||||||||||||| |||||
Sbjct: 1 tactccctccgttcctaaatataagaccttt 31
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||| | ||||||
Sbjct: 5 ccctccgttcctaaatataagaccttttag 34
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 117 bits (59), Expect = 8e-26
Identities = 134/158 (84%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtcctttaaag-attccaccagggnactacatacgg 156
||||||||| ||||| ||||||||| ||||| | | ||| ||| || |||||||||||
Sbjct: 166 tactccctccgttccaaaatataagaccttttaggtatttcactagaagactacatacgg 107
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
||||||||||| |||||| |||||||| ||| ||| |||||||||||||||||||| ||
Sbjct: 106 agcaaaatgagcgaatctatactctaaaatatgtctatgtacatccgtatgtagtttata 47
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
|| ||| ||||||| | | ||||||||||||||||||
Sbjct: 46 gtacaatctctaaaaggtcttatatttaggaacggagg 9
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtccttt 128
||||||||| ||||||||||||||| |||||
Sbjct: 4 tactccctccgttcctaaatataagaccttt 34
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||| | ||||||
Sbjct: 8 ccctccgttcctaaatataagaccttttag 37
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 117 bits (59), Expect = 8e-26
Identities = 136/159 (85%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 97 gtactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacg 155
|||||||||||||||||||||||||||| ||| | |||||| | | || ||||||||||
Sbjct: 4 gtactccctctgttcctaaatataagtctttttagagattctaatatgg-actacatacg 62
Query: 156 gagcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgt 215
||||||||||||| ||||||||||||||| || ||| | | |||||||||||||| |
Sbjct: 63 gagcaaaatgagtgaatctacactctaaaatacgtctatattcatccgtatgtagtccat 122
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
| | ||| ||||||||||| ||||||||||||||||||
Sbjct: 123 attcaaatctctaaaaagacttatatttaggaacggagg 161
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||||||||||||
Sbjct: 162 ccctccgttcctaaatataagtctttttag 133
Score = 58.0 bits (29), Expect = 6e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 51 atatagacatactttacagtgtagattcattcattttgcttcgtatgta 99
|||||||| || |||| |||||||||||| |||||||||| ||||||||
Sbjct: 103 atatagacgtattttagagtgtagattcactcattttgctccgtatgta 55
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||| ||||||||||||||||||||||||
Sbjct: 9 ccctctgttcctaaatataagtctttttag 38
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtc 124
||||||||| |||||||||||||||||
Sbjct: 166 tactccctccgttcctaaatataagtc 140
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 225 tctaaaaagacatatatttaggaacggagg 254
||||||||||| ||||||||||||| ||||
Sbjct: 39 tctaaaaagacttatatttaggaacagagg 10
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 111 bits (56), Expect = 5e-24
Identities = 135/159 (84%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtcctttaaa-gattccaccagggnactacatacgg 156
||||||||| ||||||||||||||||| ||||| |||| ||| || ||||||||||
Sbjct: 1 tactccctccgttcctaaatataagtcttttaagcgatttcactagatgtctacatacgg 60
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagt-ttgt 215
|||||||||| | ||| ||||||||||||||| ||| | |||||||||||||||| |
Sbjct: 61 agcaaaatgattgaatgtacactctaaagtatgtctatatacatccgtatgtagtccatt 120
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
|||| ||| |||| |||||| ||||||||||||||||||
Sbjct: 121 agtgaaatctctacaaagacttatatttaggaacggagg 159
Score = 67.9 bits (34), Expect = 7e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 50 tatatagacatactttacagtgtagattcattcattttgcttcgtatgta 99
||||||||||||||||| |||||| ||||| |||||||||| ||||||||
Sbjct: 101 tatatagacatactttagagtgtacattcaatcattttgctccgtatgta 52
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttt 27
|||||||||||||||||||||||||||
Sbjct: 5 ccctccgttcctaaatataagtctttt 31
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtcttt 26
||||||||||||||||||||||||||
Sbjct: 160 ccctccgttcctaaatataagtcttt 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtc 124
||||||||| |||||||||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtc 138
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 229 aaaagacatatatttaggaacggagg 254
||||||| ||||||||||||||||||
Sbjct: 31 aaaagacttatatttaggaacggagg 6
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 103 bits (52), Expect = 1e-21
Identities = 134/159 (84%), Gaps = 2/159 (1%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
||||||||| ||||||||||||||||| ||| | ||||| | | || |||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtctttttagagatttcgctagacgactacatacgg 105
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagt-ttgt 215
|||||||||||| |||||| | |||||| ||| ||| | |||||||| ||||||| | |
Sbjct: 104 agcaaaatgagtgaatctatattctaaaatatgtctatatacatccgaatgtagtctact 45
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
|||| || ||||||||||| ||||||||||||||||||
Sbjct: 44 agtgaaacctctaaaaagacttatatttaggaacggagg 6
Score = 61.9 bits (31), Expect = 4e-09
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttaggaggttccactag 43
||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 5 ccctccgttcctaaatataagtcttttta-gaggtttcactag 46
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||||||||||||
Sbjct: 160 ccctccgttcctaaatataagtctttttag 131
Score = 52.0 bits (26), Expect = 4e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 50 tatatagacatactttacagtgtagattcattcattttgcttcgtatgta 99
|||||||||||| |||| | | |||||||| |||||||||| ||||||||
Sbjct: 64 tatatagacatattttagaatatagattcactcattttgctccgtatgta 113
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 225 tctaaaaagacatatatttaggaacggagg 254
||||||||||| ||||||||||||||||||
Sbjct: 130 tctaaaaagacttatatttaggaacggagg 159
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtc 124
||||||||| |||||||||||||||||
Sbjct: 1 tactccctccgttcctaaatataagtc 27
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 87.7 bits (44), Expect = 7e-17
Identities = 82/92 (89%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 94 tatgtactccctctgttcctaaatataagtc-ctttaaagattccaccagggnactacat 152
||||||||||||| ||||||||||||||||| || || ||||| ||| | || |||||||
Sbjct: 165 tatgtactccctccgttcctaaatataagtctctgtagagatttcactatgg-actacat 107
Query: 153 acggagcaaaatgagtcaatctacactctaaa 184
||| |||||||||||| |||||||||||||||
Sbjct: 106 acgaagcaaaatgagtgaatctacactctaaa 75
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 63 tttacagtgtagattcattcattttgcttcgtatgta 99
|||| |||||||||||| |||||||||||||||||||
Sbjct: 75 tttagagtgtagattcactcattttgcttcgtatgta 111
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtct 24
||||||||||||||||||||||||
Sbjct: 157 ccctccgttcctaaatataagtct 134
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtc 124
||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatataagtc 31
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 79.8 bits (40), Expect = 2e-14
Identities = 132/159 (83%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
||||||||| |||||||||| |||||| ||| | ||||| | | | || ||||||| ||
Sbjct: 3 tactccctccgttcctaaatgtaagtctttttagagatttctctaaggggctacatatgg 62
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagt-ttgt 215
|||||||||||| ||||| ||||| |||||| ||| | |||||||||||||||| |
Sbjct: 63 agcaaaatgagtgaatctgtactct-aagtatgtctatatacatccgtatgtagtcccct 121
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
|||| || ||||||||||| ||||||||||||||||||
Sbjct: 122 agtgaaacttctaaaaagacttatatttaggaacggagg 160
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||||||||||||
Sbjct: 161 ccctccgttcctaaatataagtctttttag 132
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttag 30
|||||||||||||||| |||||||||||||
Sbjct: 7 ccctccgttcctaaatgtaagtctttttag 36
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtc 124
||||||||| |||||||||||||||||
Sbjct: 165 tactccctccgttcctaaatataagtc 139
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 225 tctaaaaagacatatatttaggaacggagg 254
||||||||||| || |||||||||||||||
Sbjct: 37 tctaaaaagacttacatttaggaacggagg 8
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 75.8 bits (38), Expect = 3e-13
Identities = 130/158 (82%), Gaps = 2/158 (1%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
||||||||| ||||||||||||||| ||||| | | |||| || | || |||||||||||
Sbjct: 5 tactccctccgttcctaaatataagaccttttagaaattctactatgg-actacatacgg 63
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
| ||||| | | || ||| || ||||| ||| ||| | ||||||||||||||||| ||
Sbjct: 64 aacaaaacaaataaacctataccctaaaatatgtctatatacatccgtatgtagttcata 123
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
||||||| |||||| | | ||||||||||||||||||
Sbjct: 124 gtgtaatacctaaaaggtcttatatttaggaacggagg 161
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtctttttagg 31
||||||||||||||||||||| | |||||||
Sbjct: 162 ccctccgttcctaaatataagaccttttagg 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtccttt 128
||||||||| ||||||||||||||| |||||
Sbjct: 166 tactccctccgttcctaaatataagaccttt 136
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||| | ||||||
Sbjct: 9 ccctccgttcctaaatataagaccttttag 38
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 75.8 bits (38), Expect = 3e-13
Identities = 130/158 (82%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
||||||||| ||||||||||||||| ||||| | | ||| ||| | | |||||||||||
Sbjct: 163 tactccctccgttcctaaatataagaccttttacaaatttcactatag-actacatacgg 105
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
|||||||||||| ||| |||| | ||| ||| || |||||||||||||||||| ||
Sbjct: 104 agcaaaatgagtgaatttacatcccaaaatatgactacatacatccgtatgtagtttata 45
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
||| || ||||||| | | ||||||||||||||||||
Sbjct: 44 gtgagatctctaaaaggtcttatatttaggaacggagg 7
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtccttt 128
||||||||| ||||||||||||||| |||||
Sbjct: 2 tactccctccgttcctaaatataagaccttt 32
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 200 tccgtatgtagtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
|||||||||||| | ||||| ||| | ||||| | | ||||||||||||||||||
Sbjct: 104 tccgtatgtagtctatagtgaaatttgtaaaaggtcttatatttaggaacggagg 158
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||| | ||||||
Sbjct: 6 ccctccgttcctaaatataagaccttttag 35
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 69.9 bits (35), Expect = 2e-11
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 200 tccgtatgtagtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
|||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 64 tccgtatgtagtccatagtgtaatctctaaaaagacttatatttaggaacggagg 10
Score = 67.9 bits (34), Expect = 7e-11
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
||||||||| ||||||||||||||||| ||| | ||||| ||| | || |||||||||||
Sbjct: 5 tactccctccgttcctaaatataagtctttttagagattacactatgg-actacatacgg 63
Query: 157 agcaaaatgagtcaatct 174
|||||||||||| |||||
Sbjct: 64 agcaaaatgagtgaatct 81
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||||||||||||
Sbjct: 9 ccctccgttcctaaatataagtctttttag 38
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtctttttag 30
||||||||||||||||||||||| ||||||
Sbjct: 111 ccctccgttcctaaatataagtccttttag 82
Score = 52.0 bits (26), Expect = 4e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 95 atgtactccctctgttcctaaatataagtccttt 128
|||||| ||||| |||||||||||||||||||||
Sbjct: 118 atgtaccccctccgttcctaaatataagtccttt 85
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 225 tctaaaaagacatatatttaggaacggagg 254
||||||| ||| ||||||||||||||||||
Sbjct: 81 tctaaaaggacttatatttaggaacggagg 110
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 60.0 bits (30), Expect = 2e-08
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 149 acatacggagcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgt 208
|||||||||| ||||||||| || ||| |||||||| | |||| |||||||||||||
Sbjct: 53 acatacggagtaaaatgagtgaacctatactctaaaatgcatctacatacatccgtatgt 112
Query: 209 agtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
|| ||||| ||| |||| |||||| |||||||||||| |||||
Sbjct: 113 ggtccatagtgaaatctctacaaagacttatatttaggaatggagg 158
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtcttt 26
||||||||||||||||||||||||||
Sbjct: 6 ccctccgttcctaaatataagtcttt 31
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtcttt 26
|||||| |||||||||||||||||||
Sbjct: 159 ccctccattcctaaatataagtcttt 134
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 58.0 bits (29), Expect = 6e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
||||||||| ||||||||||||||||| ||||| | ||| ||| || ||||||||||
Sbjct: 151 tactccctccgttcctaaatataagtcttttaagatatttcactagtagtctacatacgg 92
Query: 157 agcaaaatgagt 168
||||||||||||
Sbjct: 91 agcaaaatgagt 80
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtctttt 27
|||||||||||||||||||||||||||
Sbjct: 147 ccctccgttcctaaatataagtctttt 121
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtcttt 26
||||||||||||||||||||||||||
Sbjct: 9 ccctccgttcctaaatataagtcttt 34
Score = 48.1 bits (24), Expect = 6e-05
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataagtcctttaaaga 133
||||||||| |||||||||||||||| |||||||||
Sbjct: 5 tactccctccgttcctaaatataagt-ctttaaaga 39
Score = 48.1 bits (24), Expect = 6e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 215 tagtgtaatgtctaaaaagacatatatttaggaacggagg 254
||||| ||| ||| ||||||| ||||||||||||||||||
Sbjct: 107 tagtgaaatatcttaaaagacttatatttaggaacggagg 146
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtcttt 26
||||||||||||||||||||||||||
Sbjct: 9 ccctccgttcctaaatataagtcttt 34
Score = 52.0 bits (26), Expect = 4e-06
Identities = 87/106 (82%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 149 acatacggagcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgt 208
|||||||||| ||||||||| ||||||||| |||| | |||| | |||||||||||||
Sbjct: 56 acatacggagaaaaatgagtgaatctacaca-taaaatgcatctatatacatccgtatgt 114
Query: 209 agtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
|| |||| ||| |||| ||||| ||||||||||||||||||
Sbjct: 115 ggtccacagtgaaatatctacgaagacttatatttaggaacggagg 160
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtctt 25
|||||||||||||||||||||||||
Sbjct: 161 ccctccgttcctaaatataagtctt 137
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 97 gtactccctctgttcctaaatataagtc 124
|||||||||| |||||||||||||||||
Sbjct: 166 gtactccctccgttcctaaatataagtc 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 200 tccgtatgtagtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
||||||||| || | ||||| ||| ||| |||||| ||||||||||||||||||
Sbjct: 64 tccgtatgtggtctatagtgaaatctctccaaagacttatatttaggaacggagg 10
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 ccctccgttcctaaatataagtcttt 26
||||||||||||||||||||||||||
Sbjct: 134 ccctccgttcctaaatataagtcttt 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 98 tactccctctgttcctaaatataagtc 124
||||||||| |||||||||||||||||
Sbjct: 138 tactccctccgttcctaaatataagtc 112
>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
Japonica Group
Length = 80
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataag 122
|||||||||||||||||||||||||
Sbjct: 5 tactccctctgttcctaaatataag 29
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 97 gtactccctctgttcctaaatataag 122
|||||||||| |||||||||||||||
Sbjct: 77 gtactccctccgttcctaaatataag 52
>RF00906;MIR1122;AAAA02032049.1/7937-7781 39946:Oryza sativa Indica
Group
Length = 157
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 95 atgtactccctctgttcctaaatataag 122
||||||||||||||| ||||||||||||
Sbjct: 156 atgtactccctctgtccctaaatataag 129
>RF00906;MIR1122;AP008217.1/6469174-6469304 39947:Oryza sativa
Japonica Group
Length = 131
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatataa 121
||||||||||||||||||||||||
Sbjct: 5 tactccctctgttcctaaatataa 28
>RF01058;MIR806;AAAA02029566.1/13003-12764 39946:Oryza sativa Indica
Group
Length = 240
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 97 gtactccctctgttcctaaatat 119
|||||||||||||||||||||||
Sbjct: 240 gtactccctctgttcctaaatat 218
>RF01058;MIR806;AP008207.1/40026717-40026952 39947:Oryza sativa
Japonica Group
Length = 236
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 gtactccctctgttcctaaatat 119
|||||||||||||||||||||||
Sbjct: 1 gtactccctctgttcctaaatat 23
>RF00906;MIR1122;AC174311.25/90843-90999 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gtactccctctgttcctaaatataag 122
|||||||||||| |||||||||||||
Sbjct: 4 gtactccctctggtcctaaatataag 29
>RF00906;MIR1122;AK248235.1/1048-956 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 tactccctctgttcctaaatat 119
||||||||||||||||||||||
Sbjct: 5 tactccctctgttcctaaatat 26
>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
Length = 107
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ccctccgttcctaaatataagtcttt 26
|||||| |||||||||||||||||||
Sbjct: 9 ccctcctttcctaaatataagtcttt 34
>RF00906;MIR1122;AP008212.1/4114034-4113904 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 97 gtactccctctgttcctaaatataag 122
||||||||||||| ||||||||||||
Sbjct: 128 gtactccctctgtccctaaatataag 103