miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 165
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacgg 65
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tactccctccgttcctaaatataagtcttttaagcgatttcactagatgtctacatacgg 60
Query: 66 agcaaaatg 74
|||||||||
Sbjct: 61 agcaaaatg 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcacta 50
|||| ||||||||||||||||||||||||| || ||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtctttgtagagatttcacta 120
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 5 atacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacg 64
||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 152 atactccctccgttcctaaatataagtcttttaagatatttcactagtagtctacatacg 93
Query: 65 gagcaaaatg 74
||||||||||
Sbjct: 92 gagcaaaatg 83
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 atacttcctccgttcctaaatataagtcttt 35
||||| |||||||||||||||||||||||||
Sbjct: 4 atactccctccgttcctaaatataagtcttt 34
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 5 atacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacg 64
||||| ||||||| | ||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 4 atactccctccgtacttaaatataagtcttttaagatatttcactaggtgtctacatacg 63
Query: 65 gagcaaaat 73
|||||||||
Sbjct: 64 gagcaaaat 72
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 5 atacttcctccgttcctaaatataagtcttt 35
||||| |||||||||||||||||||||||||
Sbjct: 139 atactccctccgttcctaaatataagtcttt 109
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacgg 65
|||| |||||||||||||||||||||||||| || |||||| ||| | | ||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtctttttagagatttcgctagacgactacatacgg 105
Query: 66 agcaaaatg 74
|||||||||
Sbjct: 104 agcaaaatg 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcacta 50
|||| |||||||||||||||||||||||||| || | ||||||||
Sbjct: 1 tactccctccgttcctaaatataagtctttttagaggtttcacta 45
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 119
Score = 75.8 bits (38), Expect = 7e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 atacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacg 64
||||| |||||||||||||||||||||||||| || |||| |||||| | |||||||||
Sbjct: 4 atactccctccgttcctaaatataagtctttttagagattacactat-ggactacatacg 62
Query: 65 gagcaaaatg 74
||||||||||
Sbjct: 63 gagcaaaatg 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 cctccgttcctaaatataagtc 32
||||||||||||||||||||||
Sbjct: 110 cctccgttcctaaatataagtc 89
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 65.9 bits (33), Expect = 6e-11
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacgg 65
|||| ||||||||||||||||||||||||| || |||||||||||| | | ||||||||
Sbjct: 5 tactccctccgttcctaaatataagtctttggagagatttcactata-gaccacatacgg 63
Query: 66 agcaaaatg 74
|| ||||||
Sbjct: 64 agaaaaatg 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtctt 34
|||| ||||||||||||||||||||||||
Sbjct: 165 tactccctccgttcctaaatataagtctt 137
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 4 aatacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatac 63
|||||| ||||||||||||||| |||||||||| || |||||| ||| | |||||||
Sbjct: 1 aatactccctccgttcctaaatgtaagtctttttagagatttctctaaggggctacatat 60
Query: 64 ggagcaaaatg 74
|||||||||||
Sbjct: 61 ggagcaaaatg 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtctttt 36
|||| ||||||||||||||||||||||||||
Sbjct: 165 tactccctccgttcctaaatataagtctttt 135
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacgg 65
|||| |||||||||| ||||||||| | ||| || ||||||||| | | ||||||||||
Sbjct: 166 tactccctccgttccaaaatataagaccttttaggtatttcactagaagactacatacgg 107
Query: 66 agcaaaatg 74
|||||||||
Sbjct: 106 agcaaaatg 98
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||| ||||||||||||||||||||
Sbjct: 4 tactccctccgttcctaaatataag 28
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacgg 65
|||| |||||||||||||||||||| | ||| | ||||||||||| | ||||||||||
Sbjct: 163 tactccctccgttcctaaatataagaccttttacaaatttcactata-gactacatacgg 105
Query: 66 agcaaaatg 74
|||||||||
Sbjct: 104 agcaaaatg 96
Score = 46.1 bits (23), Expect = 6e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactata 52
|||| |||||||||||||||||||| | ||| || ||| ||||||||
Sbjct: 2 tactccctccgttcctaaatataagaccttttagagatctcactata 48
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 5 atacttcctccgttcctaaatataagtcttttaagcgattt 45
||||| |||||||||||||||||||||||||| || |||||
Sbjct: 167 atactccctccgttcctaaatataagtctttttagagattt 127
Score = 50.1 bits (25), Expect = 4e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacgg 65
|||| |||| ||||||||||||||||||||| || |||| | ||| | ||||||||||
Sbjct: 5 tactccctctgttcctaaatataagtctttttagagattctaatat-ggactacatacgg 63
Query: 66 agcaaaatg 74
|||||||||
Sbjct: 64 agcaaaatg 72
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacgg 65
|||| ||||||||||||||||||||||| | || ||||||||||| | |||||||||
Sbjct: 161 tactccctccgttcctaaatataagtctctgtagagatttcactat-ggactacatacga 103
Query: 66 agcaaaatg 74
|||||||||
Sbjct: 102 agcaaaatg 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataagtcttt 35
|||| |||||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatataagtcttt 34
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum
(bread wheat)
Length = 167
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 atacttcctccgttcctaaatataagtcttt 35
||||| |||||||||||||||||||||||||
Sbjct: 1 atactccctccgttcctaaatataagtcttt 31
Score = 52.0 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataagtcttttaagcgatttcactat 51
|||| ||||| ||||||||||||||||||| || |||||||||||
Sbjct: 163 tactccctccattcctaaatataagtctttgtagagatttcactat 118
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 5 atacttcctccgttcctaaatataagtcttttaagcgatttcactatatgtctacatacg 64
||||| |||||||||| ||||||||| | ||| || ||||||||| | |||||||||
Sbjct: 164 atactccctccgttccaaaatataagaccttttaggtatttcactaggagactacatacg 105
Query: 65 gagcaaaatg 74
||||||||||
Sbjct: 104 gagcaaaatg 95
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||| ||||||||||||||||||||
Sbjct: 1 tactccctccgttcctaaatataag 25
>RF00906;MIR1122;AP003258.3/44726-44846 39947:Oryza sativa
Japonica Group
Length = 121
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||||||||||||||||||||||||
Sbjct: 5 tacttcctccgttcctaaatataag 29
>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 aatacttcctccgttcctaaatataagtcttt 35
|||||| ||||| |||||||||||||||||||
Sbjct: 3 aatactccctcctttcctaaatataagtcttt 34
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 atacttcctccgttcctaaatataag 30
||||| ||||||||||||||||||||
Sbjct: 167 atactccctccgttcctaaatataag 142
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||| ||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatataag 29
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 atacttcctccgttcctaaatataag 30
||||| ||||||||||||||||||||
Sbjct: 4 atactccctccgttcctaaatataag 29
>RF00906;MIR1122;AACV01003381.1/5259-5104 39947:Oryza sativa
Japonica Group
Length = 156
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 ataatacttcctccgttcctaaatataag 30
|||||||| ||||||| ||||||||||||
Sbjct: 1 ataatactccctccgtccctaaatataag 29
>RF00906;MIR1122;AAAA02005173.1/305-150 39946:Oryza sativa Indica
Group
Length = 156
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 2 ataatacttcctccgttcctaaatataag 30
|||||||| ||||||| ||||||||||||
Sbjct: 156 ataatactccctccgtccctaaatataag 128
>RF00906;MIR1122;AACV01024429.1/20135-20005 39947:Oryza sativa
Japonica Group
Length = 131
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||||||||||| ||||||||||||
Sbjct: 5 tacttcctccgtccctaaatataag 29
>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
Japonica Group
Length = 156
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 ataatacttcctccgttcctaaatataag 30
|||||||| ||||||| ||||||||||||
Sbjct: 1 ataatactccctccgtccctaaatataag 29
>RF00906;MIR1122;AACV01001639.1/6893-7021 39947:Oryza sativa
Japonica Group
Length = 129
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||||||||||| ||||||||||||
Sbjct: 5 tacttcctccgtccctaaatataag 29
>RF00906;MIR1122;AP005896.3/119867-120022 39947:Oryza sativa
Japonica Group
Length = 156
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 ataatacttcctccgttcctaaatataag 30
|||||||| ||||||| ||||||||||||
Sbjct: 1 ataatactccctccgtccctaaatataag 29
>RF00906;MIR1122;AAAA02002822.1/13589-13717 39946:Oryza sativa
Indica Group
Length = 129
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||||||||||| ||||||||||||
Sbjct: 5 tacttcctccgtccctaaatataag 29
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 atacttcctccgttcctaaatataa 29
||||| |||||||||||||||||||
Sbjct: 116 atactccctccgttcctaaatataa 92
>RF00906;MIR1122;AAAA02005583.1/44128-44034 39946:Oryza sativa
Indica Group
Length = 95
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 4 aatacttcctccgttcctaaatataagtctttt 36
|||||||||||||| || |||||||||| ||||
Sbjct: 3 aatacttcctccgtcccaaaatataagtatttt 35
>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
Japonica Group
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 6 tacttcctccgttcctaaatataag 30
|||| ||||||||||||||||||||
Sbjct: 76 tactccctccgttcctaaatataag 52
>RF00906;MIR1122;AP003411.4/11367-11230 39947:Oryza sativa
Japonica Group
Length = 138
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||||||||||| ||||||||||||
Sbjct: 5 tacttcctccgtccctaaatataag 29
>RF00906;MIR1122;AACV01003934.1/29289-29133 39947:Oryza sativa
Japonica Group
Length = 157
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tacttcctccgttcctaaatataag 30
|||| ||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatataag 29
