miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00726;mir-87;ABIR01000026.1/135133-135044 6334:Trichinella
          spiralis
          Length = 90

 Score =  178 bits (90), Expect = 9e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  gccttttgcctggcgcctggaactttcgtctcagccttagattttgacaaggtgagcaaa 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gccttttgcctggcgcctggaactttcgtctcagccttagattttgacaaggtgagcaaa 60

                                        
Query: 69 gtttcaggtgtgtcggcgaacaggcaatat 98
          ||||||||||||||||||||||||||||||
Sbjct: 61 gtttcaggtgtgtcggcgaacaggcaatat 90




>RF00726;mir-87;AADG05004934.1/36715-36606 7460:Apis mellifera
          (honey bee)
          Length = 110

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 aaggtgagcaaagtttcaggtgtgt 81
          |||||||||||||||||||||||||
Sbjct: 69 aaggtgagcaaagtttcaggtgtgt 93




>RF00726;mir-87;EF710646.1/116126-116037 463051:Glyptapanteles
          flavicoxis
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 ggtgagcaaagtttcaggtgtgtc 82
          ||||||||||||||||||||||||
Sbjct: 51 ggtgagcaaagtttcaggtgtgtc 74




>RF00726;mir-87;AADG05004934.1/37299-37204 7460:Apis mellifera
          (honey bee)
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 ggtgagcaaagtttcaggtgtgtc 82
          ||||||||||||||||||||||||
Sbjct: 57 ggtgagcaaagtttcaggtgtgtc 80




>RF00726;mir-87;AAJJ01006085.1/2161-2248 7070:Tribolium castaneum
          (red flour beetle)
          Length = 88

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 59 ggtgagcaaagtttcaggtgtgtc 82
          ||||||||||||||||||||||||
Sbjct: 51 ggtgagcaaagtttcaggtgtgtc 74




>RF00726;mir-87;ABJB010390701.1/1252-1163 6945:Ixodes scapularis
          (black-legged tick)
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 58 aggtgagcaaagtttcaggtgtgt 81
          ||||||||||||||||||||||||
Sbjct: 51 aggtgagcaaagtttcaggtgtgt 74




>RF00726;mir-87;ABLG01001644.1/18434-18344 6305:Meloidogyne hapla
          Length = 91

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aggtgagcaaagtttcaggtgtg 80
          |||||||||||||||||||||||
Sbjct: 52 aggtgagcaaagtttcaggtgtg 74




>RF00726;mir-87;CABB01000990.1/14418-14510 6306:Meloidogyne
          incognita (southern root-knot nematode)
          Length = 93

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aggtgagcaaagtttcaggtgtg 80
          |||||||||||||||||||||||
Sbjct: 54 aggtgagcaaagtttcaggtgtg 76




>RF00726;mir-87;ABLA01015850.1/979-1068 51029:Heterodera glycines
          Length = 90

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aggtgagcaaagtttcaggtgtg 80
          |||||||||||||||||||||||
Sbjct: 51 aggtgagcaaagtttcaggtgtg 73




>RF00726;mir-87;ABLE02009534.1/2277-2182 281687:Caenorhabditis
          japonica
          Length = 96

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aggtgagcaaagtttcaggtgtg 80
          |||||||||||||||||||||||
Sbjct: 57 aggtgagcaaagtttcaggtgtg 79




>RF00726;mir-87;AAGD02011068.1/44388-44291 31234:Caenorhabditis
          remanei
          Length = 98

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aggtgagcaaagtttcaggtgtg 80
          |||||||||||||||||||||||
Sbjct: 58 aggtgagcaaagtttcaggtgtg 80




>RF00726;mir-87;AC084645.1/38319-38223 6238:Caenorhabditis
          briggsae
          Length = 97

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aggtgagcaaagtttcaggtgtg 80
          |||||||||||||||||||||||
Sbjct: 57 aggtgagcaaagtttcaggtgtg 79




>RF00726;mir-87;ABLF01044406.1/474-379 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 96

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aggtgagcaaagtttcaggtgtg 80
          |||||||||||||||||||||||
Sbjct: 56 aggtgagcaaagtttcaggtgtg 78




>RF00726;mir-87;AAQA01000239.1/18231-18323 6279:Brugia malayi
          Length = 93

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 aggtgagcaaagtttcaggtgt 79
          ||||||||||||||||||||||
Sbjct: 53 aggtgagcaaagtttcaggtgt 74