miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 129 bits (65), Expect = 8e-30
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 17 gtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaagttga 76
|||| ||||||||||||||||||||||||||| ||| || || |||||||||||||||||
Sbjct: 15 gtcctaaaataagtgtcttaagcttagtacaactttgtactagagctaatacaaagttga 74
Query: 77 gacagttattttgagacagagggagtata 105
||||||||||||||||| |||||||||||
Sbjct: 75 gacagttattttgagacggagggagtata 103
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 117 bits (59), Expect = 3e-26
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
||||||| ||||||||||||||||| |||||||||| ||| || || ||||| ||||| |
Sbjct: 11 ctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagtacaatg 70
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||||||||||||||||||||||||||||
Sbjct: 71 ttgagacagttattttgagacagagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 117 bits (59), Expect = 3e-26
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||||||||| ||||||||||||| ||| || ||||| ||||||||||
Sbjct: 11 ctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaatacaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||||| |||||||| ||| |||||||||
Sbjct: 71 ttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||| |||||||||||||||| ||||||||| || | ||| || ||||
Sbjct: 11 ctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctagtataaag 70
Query: 73 ttgagacagttattttgagacagagggagtat 104
||||||||||||||||| ||| ||||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagtat 102
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||| |||||||||||||||| ||||||||| || | ||| || ||||
Sbjct: 11 ctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagtataaag 70
Query: 73 ttgagacagttattttgagacagagggagtat 104
||||||||||||||||| ||| ||||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagtat 102
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 109 bits (55), Expect = 7e-24
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||| ||||||||||||||||||||||| ||||| ||| || |||| |||||||||||
Sbjct: 11 ctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaatacaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
||||||||||||||||| ||| |||| ||||
Sbjct: 71 ttgagacagttattttgggacggaggaagta 101
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 109 bits (55), Expect = 7e-24
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
||||||| |||||||| |||||||| ||||||| ||||||||| |||||||| |||||||
Sbjct: 95 ctccgtcgcaaaataaatgtcttaaacttagtataaatttatagtaaagctagtacaaag 36
Query: 73 ttgagacagttattttgagacagagggagta 103
|| |||||||||||||| ||||||||||||
Sbjct: 35 ttaagacagttattttggaacagagggagta 5
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 109 bits (55), Expect = 7e-24
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||||||||| ||||||||||||| || || ||||| ||||||||||
Sbjct: 11 ctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaatacaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||||| |||||||| ||| |||||||||
Sbjct: 71 ttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||| |||||||||||||||| ||| |||||||| ||| || || ||||| |||||||
Sbjct: 11 ctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagtacaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
||||||||||||||||| ||| |||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct: 11 ctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagctagtacaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
|| |||||| ||||||| ||| |||||||||
Sbjct: 71 ttaagacagatattttgggacggagggagta 101
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 99.6 bits (50), Expect = 7e-21
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||||||||| ||||||||| || ||| || || ||||| |||||||
Sbjct: 11 ctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagtacaaag 70
Query: 73 ttgagacagttattttgagacagagggagtatat 106
|||||||| |||||||| ||| ||||||||||||
Sbjct: 71 ttgagacacttattttgggacggagggagtatat 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtct 34
||||||||||||||||||||||
Sbjct: 95 ctccgtcccaaaataagtgtct 74
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 93.7 bits (47), Expect = 4e-19
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
||||||||||||||||||||||| ||||||||| |||||| || || || || |||||||
Sbjct: 11 ctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatagtacaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||||| |||||||| || |||||||||
Sbjct: 71 ttgagacacttattttgggatggagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 87.7 bits (44), Expect = 3e-17
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||||||||| || |||||||||| |||||| || || || |||||||
Sbjct: 11 ctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagtacaaag 70
Query: 73 ttgagacagttattttgagacagagggagtat 104
||||||| |||||||| ||| ||||||||||
Sbjct: 71 -tgagacacttattttgggacggagggagtat 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 72 gttgagacagttattttgagacagagggagtata 105
||||||||| |||||||| ||| |||||||||||
Sbjct: 36 gttgagacacttattttgggacggagggagtata 3
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtct 34
||||||||||||||||||||||
Sbjct: 94 ctccgtcccaaaataagtgtct 73
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
||||||| |||||||||||||| |||| |||||||| ||| || ||||| || |||||||
Sbjct: 11 ctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagtacaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
|| ||||| |||||||| ||| |||||||||
Sbjct: 71 ttaagacacttattttgggacggagggagta 101
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtcttaa 37
|||||||||||||||||||||||||
Sbjct: 95 ctccgtcccaaaataagtgtcttaa 71
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||||| |||||||||||| |||||||||
Sbjct: 35 ttgagacacttattttgagacggagggagta 5
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 22 aaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaagttgagacag 81
|||||||||||||||||||||||| || |||||| || ||||| |||||||| |||||
Sbjct: 20 aaaataagtgtcttaagcttagtataattttatactagagctagaacaaagttaagacaa 79
Query: 82 ttattttgagacagagggagta 103
|||||||| ||| |||||||||
Sbjct: 80 ttattttgggacggagggagta 101
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 21 caaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaagttgagaca 80
|||||||| ||||| ||||||||||||| ||| || || ||||| |||||||||||||||
Sbjct: 19 caaaataactgtctcaagcttagtacaactttgtagtagagctagtacaaagttgagaca 78
Query: 81 gttattttgagacagagggagtata 105
|||||||| | ||||||||||||
Sbjct: 79 cttattttggaagagagggagtata 103
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgagacagagggagtatat 106
|||||||||||||||||||| ||||||||||||
Sbjct: 35 ttgagacagttattttgagatggagggagtatat 2
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 78/91 (85%)
Strand = Plus / Minus
Query: 11 cactccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaa 70
|||||| || |||||||||||||| || |||||||| ||| || |||||||| |||||
Sbjct: 97 cactccatctcaaaataagtgtctcaactctagtacaactttgtattaaagctagtacaa 38
Query: 71 agttgagacagttattttgagacagagggag 101
|||||||||| |||||||| ||| |||||||
Sbjct: 37 agttgagacacttattttgggacggagggag 7
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtct 34
||||||||||||||||||||||
Sbjct: 11 ctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 77.8 bits (39), Expect = 3e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 11 cactccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaa 70
|||||||||||||||||| ||||| |||| |||||||| ||| || || | ||| |||||
Sbjct: 9 cactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactagtacaa 68
Query: 71 agttgagacagttattttg 89
|||||||||| ||||||||
Sbjct: 69 agttgagacacttattttg 87
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||| | ||| || |||||||||| |||||| || ||||| | ||||
Sbjct: 11 ctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagtgtaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||| | |||||||||||| |||||||||
Sbjct: 71 ttgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||| ||||||||| | ||| ||||||||||||| ||| || || ||||| ||||||
Sbjct: 95 ctccgttccaaaataactatctcaagcttagtacaactttgtactagagctagtacaaat 36
Query: 73 ttgagacagttattttgagacagagggagtata 105
|||||||| |||||||| || |||||||||||
Sbjct: 35 ttgagacacttattttggaacggagggagtata 3
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||| ||||| || |||| ||||| ||| || || ||||| || ||||
Sbjct: 95 ctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctagtataaag 36
Query: 73 ttgagacagttattttgagacagagggagtat 104
|||||||| |||||||| ||| || |||||||
Sbjct: 35 ttgagacacttattttgggacggatggagtat 4
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 73 ttgagacagttattttgagacagagggagta 103
||||||||||||||||| ||| |||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 29 gtgtcttaagcttagtacaaatttataataaagctaatacaaagttgagacagttatttt 88
||||||| |||||||||||| ||| || ||||| || ||||||||||||||| |||||||
Sbjct: 34 gtgtcttgagcttagtacaactttgtactaaagttagtacaaagttgagacacttatttt 93
Query: 89 gagacagagggagtat 104
| || ||||||||||
Sbjct: 94 gggatggagggagtat 109
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 39 cttagtacaaatttataataaagctaatacaaagttgagacagttattttgagacagagg 98
|||||||||| ||| || ||||| || |||||| ||||||||||||||||| ||| ||||
Sbjct: 85 cttagtacaactttgtactaaagttagtacaaacttgagacagttattttgggacggagg 144
Query: 99 gagtata 105
|||||||
Sbjct: 145 gagtata 151
Score = 56.0 bits (28), Expect = 1e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 16 cgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaagttg 75
||||||||||||||||||| || |||||||||| ||| | |||| || ||||||||||
Sbjct: 14 cgtcccaaaataagtgtctcaaccttagtacaactttgcactaaatttagtacaaagttg 73
Query: 76 agac 79
||||
Sbjct: 74 agac 77
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 22 aaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaagttgagacag 81
||||||||||||| || ||||||| || |||||| ||||||||||||||| || | |||
Sbjct: 20 aaaataagtgtctcaatcttagtataactttatactaaagctaatacaaaattaacacac 79
Query: 82 ttattttgagacagagggagtat 104
|||||||| || ||||||||||
Sbjct: 80 ttattttgggatggagggagtat 102
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 69.9 bits (35), Expect = 6e-12
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||| | ||| || |||||||||| |||||| || ||||| | ||||
Sbjct: 11 ctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagtgtaaag 70
Query: 73 ttgagacagttattttgagacagagggagta 103
||||| | |||||||||||| |||||||||
Sbjct: 71 ctgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 21 caaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaagttgagaca 80
|||||||| ||| | | ||||||||||| ||| || || ||||| |||||||||||||||
Sbjct: 19 caaaataattgtttcatgcttagtacaactttgtactagagctagtacaaagttgagaca 78
Query: 81 gttattttgagacagagggagta 103
||||||||| || |||||||||
Sbjct: 79 tttattttgaaacggagggagta 101
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 66 tacaaagttgagacagttattttgagacagagggagtat 104
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 42 tacaaagttgagacagttattttgagacggagggagtat 4
Score = 69.9 bits (35), Expect = 6e-12
Identities = 78/91 (85%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
||||||| |||||||| ||||| || ||| |||||| ||| || || ||||| |||||||
Sbjct: 11 ctccgtctcaaaataactgtctcaa-ctttgtacaactttgtactagagctagtacaaag 69
Query: 73 ttgagacagttattttgagacagagggagta 103
||||||||||||||||| || |||||||||
Sbjct: 70 ttgagacagttattttgggatggagggagta 100
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaag 72
|||||||||||||||||||||| || |||||||||| ||| || || || || | |||
Sbjct: 95 ctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagtgtaaaa 36
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||||| |||||||| ||| || ||||||
Sbjct: 35 ttgagacacttattttgggacggaaggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 72 gttgagacagttattttgagacagagggagtata 105
||||||||| |||||||| ||| |||||||||||
Sbjct: 70 gttgagacacttattttgggacggagggagtata 103
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 61.9 bits (31), Expect = 2e-09
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 17 gtcccaaaataagtgtcttaagcttagtacaaatttataataaagctaatacaaagttga 76
|||||||||||| | ||| || |||||||||| |||||| || ||||| ||||||||
Sbjct: 91 gtcccaaaataactttctcaaacttagtacaactttatactagagctagggtaaagttga 32
Query: 77 gacagttattttgagacagagggagta 103
|||| ||||||||||| |||||||||
Sbjct: 31 gacacctattttgagacggagggagta 5
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtcttaagcttagtacaaatttataataaag 61
|||||||||||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 83 ctccgtcccaaaataagtgtctcaa-cttagtacaaagttatactaaag 36
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtct 34
||||||||||||||||||||||
Sbjct: 11 ctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 66 tacaaagttgagacagttattttgagacagagggagtatat 106
|||||||||||| || |||||||| ||||||||||||||||
Sbjct: 42 tacaaagttgagtcacttattttgggacagagggagtatat 2
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 63 taatacaaagttgagacagttattttgagacagagggagtata 105
||||| |||||| |||||||||||||||||| |||| ||||||
Sbjct: 62 taatataaagttaagacagttattttgagacggaggaagtata 104
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 66 tacaaagttgagacagttattttgagacagagggagtata 105
|||||||||||| || |||||||| ||| |||||||||||
Sbjct: 63 tacaaagttgagtcacttattttgggacggagggagtata 102
>RF00906;MIR1122;AAAA02034059.1/39073-38925 39946:Oryza sativa
Indica Group
Length = 149
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 83 tattttgagacagagggagtatat 106
||||||||||||||||||||||||
Sbjct: 25 tattttgagacagagggagtatat 2
>RF00906;MIR1122;CR626933.1/11895-11804 4571:Triticum turgidum
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ctccgtcccaaaataagtgtctt 35
|||||||||||||||||||||||
Sbjct: 84 ctccgtcccaaaataagtgtctt 62
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgagacagagggagtatatg 107
||||| || |||||||| |||||||||||||||||
Sbjct: 35 ttgagtcacttattttgggacagagggagtatatg 1
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 73 ttgagacagttattttgagacagagggagta 103
|||||||| |||||||||||| |||||||||
Sbjct: 70 ttgagacaattattttgagacggagggagta 100
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 66 tacaaagttgagacagttattttgagacagagggagtat 104
|||||||||||| || |||||||| ||| ||||||||||
Sbjct: 42 tacaaagttgagtcacttattttgggacggagggagtat 4
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 tacaaagttgagacagttattttgagacagagggagta 103
|||||||||||| || |||||||| ||||||| |||||
Sbjct: 60 tacaaagttgagtcacttattttgggacagagcgagta 97
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ctccgtcccaaaataagtgtct 34
||||||||||||||||||||||
Sbjct: 11 ctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;EU730902.1/9047-9151 15368:Brachypodium
distachyon
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 24 aataagtgtcttaagcttagtacaaatttataataaag 61
|||||||||||| |||||||||||||||| ||||||
Sbjct: 84 aataagtgtctttgacttagtacaaatttattataaag 47
>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
Indica Group
Length = 161
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 83 tattttgagacagagggagtat 104
||||||||||||||||||||||
Sbjct: 25 tattttgagacagagggagtat 4
>RF00906;MIR1122;AP008209.1/35587272-35587192 39947:Oryza sativa
Japonica Group
Length = 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 tattttgagacagagggagtat 104
||||||||||||||||||||||
Sbjct: 57 tattttgagacagagggagtat 78
>RF00906;MIR1122;AACV01005102.1/8103-7991 39947:Oryza sativa
Japonica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 82 ttattttgagacagagggagta 103
||||||||||||||||||||||
Sbjct: 26 ttattttgagacagagggagta 5
