miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 31 caaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttgaaaca 90
|||||||||||||| ||||||||||||| |||||| ||||| ||||||||| |||| |||
Sbjct: 87 caaaataagtgtctcaactctagtacaactttgtattaaagctagtacaaagttgagaca 28
Query: 91 cttattttgg 100
||||||||||
Sbjct: 27 cttattttgg 18
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaact 49
|||||| |||||||||||||||||| ||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaact 37
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 89.7 bits (45), Expect = 8e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| ||| |||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 8 tccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagtaca 67
Query: 80 aacttgaaacacttattttgg 100
|| || | |||||||||||||
Sbjct: 68 aagttaagacacttattttgg 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 20 tccctcagtcccaaaataagtgtcttaact 49
|||||| |||||||||||||||||||||||
Sbjct: 98 tccctccgtcccaaaataagtgtcttaact 69
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 83.8 bits (42), Expect = 5e-16
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||||||||||||||||| ||| |||||||||||| ||||| ||||||||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagtaca 67
Query: 80 aacttgaaacacttattttggnacananggagtat 114
|| ||| ||||||||||||| || | |||||||
Sbjct: 68 aa-gtgagacacttattttgggacggagggagtat 101
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||||||||||||||||| ||| |||||||| ||||||||| ||||||| |
Sbjct: 98 tccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagtgta 39
Query: 80 aacttgaaacacttattttgg 100
|| |||| |||||||||||||
Sbjct: 38 aaattgagacacttattttgg 18
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||||||||||||||||| || |||||||| ||||||||||||||| ||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaataca 67
Query: 80 aacttgaaacacttattttgg 100
|| |||| ||| |||||||||
Sbjct: 68 aagttgagacatttattttgg 88
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 77.8 bits (39), Expect = 3e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 51 tagtacaattttgtactaaagttagtacaaacttgaaacacttattttggnacanangga 110
|||||||| ||||||||||||||||||||||||||| ||| ||||||||| || | |||
Sbjct: 87 tagtacaactttgtactaaagttagtacaaacttgagacagttattttgggacggaggga 146
Query: 111 gtat 114
||||
Sbjct: 147 gtat 150
Score = 63.9 bits (32), Expect = 5e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 27 gtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttga 86
|||||||||||||||||| ||| |||||||| |||| |||||| |||||||||| ||||
Sbjct: 15 gtcccaaaataagtgtctcaaccttagtacaactttgcactaaatttagtacaaagttga 74
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||||||||||||||||| || |||| |||||||||||| || |||||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagtaca 67
Query: 80 aacttgaaacacttattttggnacananggagtat 114
|| |||| ||||||||||||| || | |||||||
Sbjct: 68 aagttgagacacttattttgggacggagggagtat 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 20 tccctcagtcccaaaataagtgtcttaact 49
|||||| |||||||||||||||||| ||||
Sbjct: 98 tccctccgtcccaaaataagtgtctcaact 69
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 51 tagtacaattttgtactaaagttagtacaaacttgaaacacttattttgg 100
|||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct: 46 tagtacaactttgtactaaagttagtacaaagttgagacacttattttgg 95
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| ||||||||||||||||||| | ||||| || ||||||||| || |||||||
Sbjct: 8 tccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatagtaca 67
Query: 80 aacttgaaacacttattttgg 100
|| |||| |||||||||||||
Sbjct: 68 aagttgagacacttattttgg 88
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| || |||||||||||||||| | |||||||||||||||||| || |||||||
Sbjct: 8 tccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagtaca 67
Query: 80 aacttgaaacacttattttgg 100
|| |||| ||| |||||||||
Sbjct: 68 aagttgagacagttattttgg 88
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| ||| ||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct: 8 tccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagtaca 67
Query: 80 aacttgaaacacttattttggnacananggagta 113
| |||| ||| |||||||| ||| | ||||||
Sbjct: 68 atgttgagacagttattttgagacagagggagta 101
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||||||||||||||||| || |||||||| |||||||||||||| ||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaataca 67
Query: 80 aacttgaaacacttattttgg 100
|| |||| ||| |||||||||
Sbjct: 68 aagttgagacatttattttgg 88
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 67.9 bits (34), Expect = 3e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 27 gtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttga 86
|||||||||||| ||||| || ||||||||| ||||||||| | ||||||||| ||||
Sbjct: 15 gtcccaaaataactgtctcaagcctagtacaactttgtactagaactagtacaaagttga 74
Query: 87 aacacttattttgg 100
|||||||||||||
Sbjct: 75 gacacttattttgg 88
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| || |||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct: 8 tccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaataca 67
Query: 80 aacttgaaacacttattttgg 100
|| |||| ||| |||||||||
Sbjct: 68 aagttgagacagttattttgg 88
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 63.9 bits (32), Expect = 5e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||| |||||||||||||||| |||||||| ||||||||| || || ||||
Sbjct: 8 tccctcggtcctaaaataagtgtcttaagcttagtacaactttgtactagagctaataca 67
Query: 80 aacttgaaacacttattttg 99
|| |||| ||| ||||||||
Sbjct: 68 aagttgagacagttattttg 87
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 51 tagtacaattttgtactaaagttagtacaaacttgaaacacttattttggnacanangga 110
|||||||| ||||||||| || ||||||||| |||| ||||||||||||| || | |||
Sbjct: 67 tagtacaactttgtactagagctagtacaaatttgagacacttattttggaacggaggga 8
Query: 111 gtat 114
||||
Sbjct: 7 gtat 4
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 60.0 bits (30), Expect = 8e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaa 69
|||||| |||||||||||||||||| |||| ||||| || ||||||||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaactttagtataactttgtactaa 57
Score = 48.1 bits (24), Expect = 3e-05
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 22 cctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagtt 73
|||| |||||||||||||||||| |||| |||||||| || ||||||||||
Sbjct: 84 cctccgtcccaaaataagtgtctcaact-tagtacaaagttatactaaagtt 34
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 8e-09
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||||||||||| ||||| || || ||||| ||||||||| || ||||| |
Sbjct: 98 tccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctagtata 39
Query: 80 aacttgaaacacttattttggnacananggagtat 114
|| |||| ||||||||||||| || | |||||||
Sbjct: 38 aagttgagacacttattttgggacggatggagtat 4
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 54.0 bits (27), Expect = 5e-07
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 51 tagtacaattttgtactaaagttagtacaaacttgaaacacttattttggnacanangga 110
|||||||| |||||| || || ||||||||| |||| ||||||||||||| | | | |||
Sbjct: 39 tagtacaactttgtagtagagctagtacaaagttgagacacttattttggaagagaggga 98
Query: 111 gtat 114
||||
Sbjct: 99 gtat 102
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 21 ccctcagtcccaaaataagtgtcttaactctagtacaatttt 62
||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 9 ccctccgtcccaaaataagtgtcttaagcttagtacaatttt 50
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 28 tcccaaaataagtgtcttaactctagtacaattttgtactaaagtt 73
|||||||||||||||||| || |||||||| |||||||| |||||
Sbjct: 90 tcccaaaataagtgtctttgctttagtacaactttgtactgaagtt 45
>RF00906;MIR1122;DQ106595.1/374-276 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 60 tttgtactaa--agttagtacaaacttgaaacacttattttggnacananggagtat 114
|||||||||| |||||||||||| ||||| ||||||||||| ||| | |||||||
Sbjct: 60 tttgtactaactagttagtacaaagttgaatcacttattttgagacacatggagtat 4
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 68 aaagttagtacaaacttgaaacacttattttggnacananggagtatgaa 117
|||||||||||||| |||| |||||||||||| || | ||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttgggacggagggagtatgaa 1
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 66 ctaaagttagtacaaacttgaaacacttattttgg 100
|||||||||||||||| |||| ||||||||||||
Sbjct: 81 ctaaagttagtacaaagttgagtcacttattttgg 115
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tttgtactaaagttagtacaaacttga 86
|||||||||||||||||||||| ||||
Sbjct: 37 tttgtactaaagttagtacaaagttga 63
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tttgtactaaagttagtacaaacttga 86
|||||||||||||||||||||| ||||
Sbjct: 37 tttgtactaaagttagtacaaagttga 63
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ataatccctcagtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 4 ataatccctctgtcccaaaataagtg 29
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 20 tccctcagtcccaaaataagtgtcttaact 49
|||||| |||||||||||| ||||||||||
Sbjct: 98 tccctccgtcccaaaataattgtcttaact 69
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 72 ttagtacaaacttgaaacacttattttggnacananggagtat 114
|||||||||| |||| |||||||||||| ||| | |||||||
Sbjct: 46 ttagtacaaagttgagtcacttattttgggacagagggagtat 4
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 76/95 (80%)
Strand = Plus / Plus
Query: 20 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 79
|||||| |||||||||||| |||||||| ||||| || ||| ||||| | ||||| |
Sbjct: 8 tccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagtata 67
Query: 80 aacttgaaacacttattttggnacananggagtat 114
|| |||| ||| ||||||||| || | |||||||
Sbjct: 68 aagttgagacagttattttgggacggagggagtat 102
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 aattttgtactaaagttagtacaaacttga 86
|||||||||||| |||||||||||| ||||
Sbjct: 45 aattttgtactatagttagtacaaagttga 74
