miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00882;MIR811;AAAA02017217.1/1664-1856 39946:Oryza sativa Indica
Group
Length = 193
Score = 77.8 bits (39), Expect = 5e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactca 88
|||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 34 ggacgttcgagattcgtccacgtcatcacaagtaaaaattttactca 80
Score = 63.9 bits (32), Expect = 8e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 49 cgagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct: 153 cgagattcgtccacgtcatcacgagtaaaaaatttactcacggattta 106
>RF00882;MIR811;AP008213.1/28286961-28287136 39947:Oryza sativa
Japonica Group
Length = 176
Score = 71.9 bits (36), Expect = 3e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggatttatt 98
||||||||||||| | |||||||||||| |||||||| ||||||||| ||||||||
Sbjct: 142 gacgttcgagattcgaccacgtcatcacgagtaaaaattttactcatagatttatt 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
|||||| ||||||| ||||||||||||| ||||||||
Sbjct: 34 ggacgtccgagattcgtccacgtcatcattagtaaaaa 71
>RF00882;MIR811;AACV01012189.1/5143-5335 39947:Oryza sativa Japonica
Group
Length = 193
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactca 88
|||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 160 ggacgttcgagattcatccacgtcatcacaagtaaaaattttactca 114
Score = 63.9 bits (32), Expect = 8e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 49 cgagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct: 41 cgagattcgtccacgtcatcacgagtaaaaaatttactcacggattta 88
>RF00882;MIR811;AACV01019844.1/6031-5844 39947:Oryza sativa Japonica
Group
Length = 188
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 51 agatttgtccacgtcatcacaagtaaaaagtttactcatggatttattgatgagt 105
|||||||||||||||| |||||||||||| |||||||| ||||||| | ||||||
Sbjct: 42 agatttgtccacgtcaccacaagtaaaaattttactcacggatttactcatgagt 96
>RF00882;MIR811;AACV01022546.1/20331-20142 39947:Oryza sativa
Japonica Group
Length = 190
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 51 agatttgtccacgtcatcacaagtaaaaagtttactc 87
|||||||||||||||||||| |||||||| |||||||
Sbjct: 148 agatttgtccacgtcatcacgagtaaaaattttactc 112
>RF00882;MIR811;AP008216.1/12703892-12703725 39947:Oryza sativa
Japonica Group
Length = 168
Score = 58.0 bits (29), Expect = 5e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactc 87
||||||||||||| ||||| |||||||| |||||||| |||||||
Sbjct: 36 gacgttcgagattcgtccatgtcatcacgagtaaaaattttactc 80
>RF00882;MIR811;AAAA02013984.1/12288-12098 39946:Oryza sativa Indica
Group
Length = 191
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 50 gagatttgtccacgtcatcacaagtaaaaagtttactcatggatttattgatgagt 105
|||||| |||||||||||||| | |||||| ||||||| |||||||| | ||||||
Sbjct: 43 gagattcgtccacgtcatcacgattaaaaattttactcgtggatttactcatgagt 98
>RF00882;MIR811;AP005779.3/51362-51173 39947:Oryza sativa Japonica
Group
Length = 190
Score = 54.0 bits (27), Expect = 7e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 50 gagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
||||||||| ||||||||||| | |||||| |||||||| |||||||
Sbjct: 42 gagatttgttcacgtcatcacgaataaaaattttactcacggattta 88
>RF00882;MIR811;AY947245.1/9-198 4530:Oryza sativa (rice)
Length = 190
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 51 agatttgtccacgtcatcacaagtaaaaagtttactcat 89
||||| |||||||||||||| |||||||| |||||||||
Sbjct: 43 agattcgtccacgtcatcacgagtaaaaattttactcat 81
>RF00882;MIR811;AACV01018529.1/7420-7582 39947:Oryza sativa
Japonica Group
Length = 163
Score = 54.0 bits (27), Expect = 7e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactca 88
|||||| ||||||| |||||||||||||| |||| ||| ||||||||
Sbjct: 34 ggacgtccgagattcgtccacgtcatcacgagtataaattttactca 80
>RF00882;MIR811;ABRL01001766.1/2922-2733 65489:Oryza barthii
Length = 190
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 51 agatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 148 agattcgtccacgtcatcacgagtaaaaattttactcgtgaattta 103
>RF00882;MIR811;AC025906.2/63397-63226 4530:Oryza sativa (rice)
Length = 172
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactc 87
|||||||||||||| ||||||||||||| ||| |||| |||||||
Sbjct: 34 ggacgttcgagattcgtccacgtcatcatgagttaaaattttactc 79
>RF00882;MIR811;AACV01010725.1/18625-18794 39947:Oryza sativa
Japonica Group
Length = 170
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 50 gagatttgtccacgtcatcacaagtaaaaagtttactc 87
|||||||||||| |||||||| |||||||| |||||||
Sbjct: 42 gagatttgtccatgtcatcacgagtaaaaattttactc 79
>RF00882;MIR811;AP008207.1/26797227-26797432 39947:Oryza sativa
Japonica Group
Length = 206
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 50 gagatttgtccacgtcatcacaagtaaaaagtttactc 87
|||||| |||||||||||||| |||||||| |||||||
Sbjct: 34 gagattcgtccacgtcatcacgagtaaaaattttactc 71
>RF00882;MIR811;AP008218.1/21789829-21789658 39947:Oryza sativa
Japonica Group
Length = 172
Score = 48.1 bits (24), Expect = 5e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 51 agatttgtccacgtcatcacaagtaaaaagtttactcatggatt 94
||||||||||| ||||||| |||||||| ||||||| ||||||
Sbjct: 43 agatttgtccatatcatcacgagtaaaaattttactcgtggatt 86
>RF00882;MIR811;AAAA02000662.1/53247-53081 39946:Oryza sativa Indica
Group
Length = 167
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 58 tccacgtcatcacaagtaaaaagtttactcatggat 93
||||||||||| | |||||||| |||||||||||||
Sbjct: 118 tccacgtcatctcgagtaaaaattttactcatggat 83
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
|||||| ||||||| |||||||||||||| ||| ||||
Sbjct: 34 ggacgtccgagattcgtccacgtcatcacgagttaaaa 71
>RF00882;MIR811;AACV01007622.1/14314-14170 39947:Oryza sativa
Japonica Group
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggat 93
||||| ||||||| ||||||||||||| ||||||| |||||||| ||||
Sbjct: 35 gacgtccgagattcatccacgtcatcacgagtaaaagttttactcacggat 85
>RF00882;MIR811;AAAA02010683.1/11721-11865 39946:Oryza sativa Indica
Group
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggat 93
||||| ||||||| ||||||||||||| ||||||| |||||||| ||||
Sbjct: 111 gacgtccgagattcatccacgtcatcacgagtaaaagttttactcacggat 61
>RF00882;MIR811;AACV01011159.1/48984-49160 39947:Oryza sativa
Japonica Group
Length = 177
Score = 44.1 bits (22), Expect = 7e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
||||| ||||||| |||||||||||| |||| ||| |||||||| |||||||
Sbjct: 143 gacgtccgagattcatccacgtcatcatgagtagaaattttactcacggattta 90
>RF00882;MIR811;AP008207.1/38757388-38757184 39947:Oryza sativa
Japonica Group
Length = 205
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 gagatttgtccacgtcatcacaagtaaaaa 79
||||||||||||||||||||| ||| ||||
Sbjct: 38 gagatttgtccacgtcatcacgagttaaaa 67
>RF00882;MIR811;AACV01010297.1/740-918 39947:Oryza sativa Japonica
Group
Length = 179
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
||||||||||||||| ||||||||| || ||||||||
Sbjct: 34 ggacgttcgagatttatccacgtcaccatgagtaaaaa 71
>RF00882;MIR811;AAAA02030891.1/38028-38217 39946:Oryza sativa Indica
Group
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
|||||||||||||| |||||||||| || ||||||||
Sbjct: 157 ggacgttcgagattcgtccacgtcaccatgagtaaaaa 120
>RF00882;MIR811;AACV01019643.1/16248-16437 39947:Oryza sativa
Japonica Group
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactc 87
|||||| ||||||| ||||||||||||| ||||| || |||||||
Sbjct: 157 ggacgtccgagattcttccacgtcatcacgagtaataattttactc 112