miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00882;MIR811;AAAA02017217.1/1664-1856 39946:Oryza sativa Indica
          Group
          Length = 193

 Score = 77.8 bits (39), Expect = 5e-14
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                         
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactca 88
          |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 34 ggacgttcgagattcgtccacgtcatcacaagtaaaaattttactca 80



 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 49  cgagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
           ||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct: 153 cgagattcgtccacgtcatcacgagtaaaaaatttactcacggattta 106




>RF00882;MIR811;AP008213.1/28286961-28287136 39947:Oryza sativa
           Japonica Group
          Length = 176

 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 43  gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggatttatt 98
           ||||||||||||| | |||||||||||| |||||||| ||||||||| ||||||||
Sbjct: 142 gacgttcgagattcgaccacgtcatcacgagtaaaaattttactcatagatttatt 87



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
          |||||| ||||||| |||||||||||||  ||||||||
Sbjct: 34 ggacgtccgagattcgtccacgtcatcattagtaaaaa 71




>RF00882;MIR811;AACV01012189.1/5143-5335 39947:Oryza sativa Japonica
           Group
          Length = 193

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 42  ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactca 88
           ||||||||||||||  |||||||||||||||||||||| ||||||||
Sbjct: 160 ggacgttcgagattcatccacgtcatcacaagtaaaaattttactca 114



 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                          
Query: 49 cgagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
          ||||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct: 41 cgagattcgtccacgtcatcacgagtaaaaaatttactcacggattta 88




>RF00882;MIR811;AACV01019844.1/6031-5844 39947:Oryza sativa Japonica
           Group
          Length = 188

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 51  agatttgtccacgtcatcacaagtaaaaagtttactcatggatttattgatgagt 105
           |||||||||||||||| |||||||||||| |||||||| ||||||| | ||||||
Sbjct: 42  agatttgtccacgtcaccacaagtaaaaattttactcacggatttactcatgagt 96




>RF00882;MIR811;AACV01022546.1/20331-20142 39947:Oryza sativa
           Japonica Group
          Length = 190

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 51  agatttgtccacgtcatcacaagtaaaaagtttactc 87
           |||||||||||||||||||| |||||||| |||||||
Sbjct: 148 agatttgtccacgtcatcacgagtaaaaattttactc 112




>RF00882;MIR811;AP008216.1/12703892-12703725 39947:Oryza sativa
          Japonica Group
          Length = 168

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                       
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactc 87
          ||||||||||||| ||||| |||||||| |||||||| |||||||
Sbjct: 36 gacgttcgagattcgtccatgtcatcacgagtaaaaattttactc 80




>RF00882;MIR811;AAAA02013984.1/12288-12098 39946:Oryza sativa Indica
           Group
          Length = 191

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 50  gagatttgtccacgtcatcacaagtaaaaagtttactcatggatttattgatgagt 105
           |||||| |||||||||||||| | |||||| ||||||| |||||||| | ||||||
Sbjct: 43  gagattcgtccacgtcatcacgattaaaaattttactcgtggatttactcatgagt 98




>RF00882;MIR811;AP005779.3/51362-51173 39947:Oryza sativa Japonica
          Group
          Length = 190

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 50 gagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
          ||||||||| ||||||||||| | |||||| |||||||| |||||||
Sbjct: 42 gagatttgttcacgtcatcacgaataaaaattttactcacggattta 88




>RF00882;MIR811;AY947245.1/9-198 4530:Oryza sativa (rice)
          Length = 190

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 51 agatttgtccacgtcatcacaagtaaaaagtttactcat 89
          ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 43 agattcgtccacgtcatcacgagtaaaaattttactcat 81




>RF00882;MIR811;AACV01018529.1/7420-7582 39947:Oryza sativa
          Japonica Group
          Length = 163

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactca 88
          |||||| ||||||| |||||||||||||| |||| ||| ||||||||
Sbjct: 34 ggacgtccgagattcgtccacgtcatcacgagtataaattttactca 80




>RF00882;MIR811;ABRL01001766.1/2922-2733 65489:Oryza barthii
          Length = 190

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 51  agatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
           ||||| |||||||||||||| |||||||| ||||||| || |||||
Sbjct: 148 agattcgtccacgtcatcacgagtaaaaattttactcgtgaattta 103




>RF00882;MIR811;AC025906.2/63397-63226 4530:Oryza sativa (rice)
          Length = 172

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                        
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactc 87
          |||||||||||||| |||||||||||||  ||| |||| |||||||
Sbjct: 34 ggacgttcgagattcgtccacgtcatcatgagttaaaattttactc 79




>RF00882;MIR811;AACV01010725.1/18625-18794 39947:Oryza sativa
          Japonica Group
          Length = 170

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 50 gagatttgtccacgtcatcacaagtaaaaagtttactc 87
          |||||||||||| |||||||| |||||||| |||||||
Sbjct: 42 gagatttgtccatgtcatcacgagtaaaaattttactc 79




>RF00882;MIR811;AP008207.1/26797227-26797432 39947:Oryza sativa
          Japonica Group
          Length = 206

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 50 gagatttgtccacgtcatcacaagtaaaaagtttactc 87
          |||||| |||||||||||||| |||||||| |||||||
Sbjct: 34 gagattcgtccacgtcatcacgagtaaaaattttactc 71




>RF00882;MIR811;AP008218.1/21789829-21789658 39947:Oryza sativa
          Japonica Group
          Length = 172

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                      
Query: 51 agatttgtccacgtcatcacaagtaaaaagtttactcatggatt 94
          |||||||||||  ||||||| |||||||| ||||||| ||||||
Sbjct: 43 agatttgtccatatcatcacgagtaaaaattttactcgtggatt 86




>RF00882;MIR811;AAAA02000662.1/53247-53081 39946:Oryza sativa Indica
           Group
          Length = 167

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 58  tccacgtcatcacaagtaaaaagtttactcatggat 93
           ||||||||||| | |||||||| |||||||||||||
Sbjct: 118 tccacgtcatctcgagtaaaaattttactcatggat 83



 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
          |||||| ||||||| |||||||||||||| ||| ||||
Sbjct: 34 ggacgtccgagattcgtccacgtcatcacgagttaaaa 71




>RF00882;MIR811;AACV01007622.1/14314-14170 39947:Oryza sativa
          Japonica Group
          Length = 145

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                             
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggat 93
          ||||| |||||||  ||||||||||||| |||||||  |||||||| ||||
Sbjct: 35 gacgtccgagattcatccacgtcatcacgagtaaaagttttactcacggat 85




>RF00882;MIR811;AAAA02010683.1/11721-11865 39946:Oryza sativa Indica
           Group
          Length = 145

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 43  gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggat 93
           ||||| |||||||  ||||||||||||| |||||||  |||||||| ||||
Sbjct: 111 gacgtccgagattcatccacgtcatcacgagtaaaagttttactcacggat 61




>RF00882;MIR811;AACV01011159.1/48984-49160 39947:Oryza sativa
           Japonica Group
          Length = 177

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 43  gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
           ||||| |||||||  ||||||||||||  |||| ||| |||||||| |||||||
Sbjct: 143 gacgtccgagattcatccacgtcatcatgagtagaaattttactcacggattta 90




>RF00882;MIR811;AP008207.1/38757388-38757184 39947:Oryza sativa
          Japonica Group
          Length = 205

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 50 gagatttgtccacgtcatcacaagtaaaaa 79
          ||||||||||||||||||||| ||| ||||
Sbjct: 38 gagatttgtccacgtcatcacgagttaaaa 67




>RF00882;MIR811;AACV01010297.1/740-918 39947:Oryza sativa Japonica
          Group
          Length = 179

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 42 ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
          ||||||||||||||| ||||||||| ||  ||||||||
Sbjct: 34 ggacgttcgagatttatccacgtcaccatgagtaaaaa 71




>RF00882;MIR811;AAAA02030891.1/38028-38217 39946:Oryza sativa Indica
           Group
          Length = 190

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 42  ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
           |||||||||||||| |||||||||| ||  ||||||||
Sbjct: 157 ggacgttcgagattcgtccacgtcaccatgagtaaaaa 120




>RF00882;MIR811;AACV01019643.1/16248-16437 39947:Oryza sativa
           Japonica Group
          Length = 190

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 42  ggacgttcgagatttgtccacgtcatcacaagtaaaaagtttactc 87
           |||||| |||||||  ||||||||||||| ||||| || |||||||
Sbjct: 157 ggacgtccgagattcttccacgtcatcacgagtaataattttactc 112