miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
          Length = 90

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 358 tcatgtgttctcaggtcgcccctgcgggact 388
           ||||||||||||||||||||||||| |||||
Sbjct: 57  tcatgtgttctcaggtcgcccctgctggact 87




>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
           (castor bean)
          Length = 138

 Score = 52.0 bits (26), Expect = 6e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 358 tcatgtgttctcaggtcgcccctgcgggactttc 391
           ||||||||||||||||||||||||| || |||||
Sbjct: 105 tcatgtgttctcaggtcgcccctgccgggctttc 138




>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
           trichocarpa
          Length = 86

 Score = 50.1 bits (25), Expect = 3e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 358 tcatgtgttctcaggtcgcccctgc 382
           |||||||||||||||||||||||||
Sbjct: 53  tcatgtgttctcaggtcgcccctgc 77




>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
           (barrel medic)
          Length = 97

 Score = 50.1 bits (25), Expect = 3e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 358 tcatgtgttctcaggtcgcccctgc 382
           |||||||||||||||||||||||||
Sbjct: 64  tcatgtgttctcaggtcgcccctgc 88



 Score = 46.1 bits (23), Expect = 4e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 25 tgttctacagggtcgtcctgagaccacatga 55
          ||||||||||||||| | |||||||||||||
Sbjct: 4  tgttctacagggtcgacatgagaccacatga 34




>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
           alba
          Length = 81

 Score = 48.1 bits (24), Expect = 1e-04
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 359 catgtgttctcaggtcgcccctgc 382
           ||||||||||||||||||||||||
Sbjct: 49  catgtgttctcaggtcgcccctgc 72




>RF00695;MIR398;ABXC01000980.1/272433-272305 4558:Sorghum bicolor
           (sorghum)
          Length = 129

 Score = 46.1 bits (23), Expect = 4e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 359 catgtgttctcaggtcgcccctgcggg 385
           ||||||||||||||||||||| |||||
Sbjct: 97  catgtgttctcaggtcgcccccgcggg 123