miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
          trichocarpa
          Length = 148

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 1  ggtcatgcttttccacagctttcttgaacttctt 34
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttctt 34



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 108 gaagctcaagaaagctgtgggagaatatggc 138
           ||||||||||||||||||||||||| |||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatggc 146




>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 1  ggtcatgcttttccacagctttcttgaacttctt 34
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttctt 34



 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 107 agaagctcaagaaagctgtgggagaatatggc 138
           ||||||||||||||||||||||||||||||||
Sbjct: 71  agaagctcaagaaagctgtgggagaatatggc 102




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 1  ggtcatgcttttccacagctttcttgaacttctt 34
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttctt 34



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 107 agaagctcaagaaagctgtgggagaatatggc 138
           |||||||||||||||| |||||| ||||||||
Sbjct: 75  agaagctcaagaaagccgtgggaaaatatggc 106




>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 2  gtcatgcttttccacagctttcttgaacttctt 34
          |||||||||||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaacttctt 34



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 113 tcaagaaagctgtgggagaatatggc 138
           |||||||||||||||||||| |||||
Sbjct: 106 tcaagaaagctgtgggagaacatggc 131




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
          trichocarpa
          Length = 157

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  ggtcatgcttttccacagctttcttgaacttc 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttc 32



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 108 gaagctcaagaaagctgtgggagaatatggc 138
           ||||||||||||||| ||||||||| |||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatggc 155




>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
          Length = 105

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 4  catgcttttccacagctttcttgaacttctt 34
          |||||||||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttctt 34




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
          (papaya)
          Length = 159

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 1  ggtcatgcttttccacagctttcttgaacttctt 34
          ||||||| ||||||||||||||||||||||||||
Sbjct: 1  ggtcatgtttttccacagctttcttgaacttctt 34



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 agaagctcaagaaagctgtgggag 130
           ||||||||||||||||||||||||
Sbjct: 126 agaagctcaagaaagctgtgggag 149




>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
          Length = 113

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 2  gtcatgcttttccacagctttcttgaact 30
          |||||||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaact 30



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 107 agaagctcaagaaagctgtgggag 130
           ||||||||||||||||||||||||
Sbjct: 80  agaagctcaagaaagctgtgggag 103




>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
          (thale cress)
          Length = 136

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 1  ggtcatgcttttccacagctttcttgaactt 31
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ggtcatacttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 108 gaagctcaagaaagctgtggga 129
           ||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 3  tcatgcttttccacagctttcttgaacttct 33
          ||||| |||||||||||||||||||||||||
Sbjct: 3  tcatgtttttccacagctttcttgaacttct 33




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
          trichocarpa
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 1  ggtcatgcttttccacagctttcttgaacttctt 34
          ||||||||| |||||| |||||||||||||||||
Sbjct: 1  ggtcatgctattccacggctttcttgaacttctt 34



 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 4   catgcttttccacagctttcttgaacttc 32
           |||| ||||||||||||||||||||||||
Sbjct: 101 catgtttttccacagctttcttgaacttc 73




>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
          (sorghum)
          Length = 144

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 4  catgcttttccacagctttcttgaacttct 33
          ||||| ||||||||||||||||||||||||
Sbjct: 4  catgcctttccacagctttcttgaacttct 33




>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 4  catgcttttccacagctttcttgaacttct 33
          ||||| ||||||||||||||||||||||||
Sbjct: 4  catgcctttccacagctttcttgaacttct 33




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 2  gtcatgcttttccacagctttcttgaactt 31
          ||||| ||||||||||||||||||||||||
Sbjct: 2  gtcatacttttccacagctttcttgaactt 31




>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
          trichocarpa
          Length = 171

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 4  catgcttttccacagctttcttgaactt 31
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31




>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
          Length = 175

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 4  catgcttttccacagctttcttgaactt 31
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  ttttccacagctttcttgaactt 31
          |||||||||||||||||||||||
Sbjct: 9  ttttccacagctttcttgaactt 31