miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;AADG05011415.1/92-6 7460:Apis mellifera (honey
          bee)
          Length = 87

 Score =  172 bits (87), Expect = 6e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                      
Query: 11 cttgttcataagtactagtgccgcaggagtgactaggttgggttagaaattaccatatct 70
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cttgttcataagtactagtgccgcaggagtgactaggttgggttagaaattaccatatct 60

                                     
Query: 71 cctgctgctcaagtgcttatcaatggg 97
          |||||||||||||||||||||||||||
Sbjct: 61 cctgctgctcaagtgcttatcaatggg 87




>RF00838;mir-252;AAZX01009285.1/3883-4013 7425:Nasonia vitripennis
           (jewel wasp)
          Length = 131

 Score =  123 bits (62), Expect = 5e-28
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                       
Query: 3   aatcctgtcttgttcataagtactagtgccgcaggagtgactaggttgggttagaaatta 62
           ||||| ||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 13  aatcccgtcctgttcctaagtactagtgccgcaggagtgactagattgggctagaaatta 72

                                             
Query: 63  ccatatctcctgctgctcaagtgcttatcaatgg 96
           ||   |||||||||||||||||||||||||||||
Sbjct: 73  ccgcgtctcctgctgctcaagtgcttatcaatgg 106




>RF00838;mir-252;AAJJ01000151.1/90694-90592 7070:Tribolium
          castaneum (red flour beetle)
          Length = 103

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 69 ctcctgctgctcaagtgcttatcaatggg 97
          |||||||||||||||||||||||||||||
Sbjct: 58 ctcctgctgctcaagtgcttatcaatggg 86



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48




>RF00838;mir-252;BABH01035687.1/2460-2355 7091:Bombyx mori
          (domestic silkworm)
          Length = 106

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 11 cttgttcataagtactagtgccgcaggag 39
          ||||||| |||||||||||||||||||||
Sbjct: 19 cttgttcctaagtactagtgccgcaggag 47



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 66 tatctcctgctgctcaagtgcttatcaatg 95
          |||||||||||||  |||||||||||||||
Sbjct: 58 tatctcctgctgcctaagtgcttatcaatg 87




>RF00838;mir-252;ABLF01035568.1/15094-15205 7029:Acyrthosiphon
          pisum (pea aphid)
          Length = 112

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 66 tatctcctgctgctcaagtgcttatcaa 93
          |||||||||| |||||||||||||||||
Sbjct: 64 tatctcctgcagctcaagtgcttatcaa 91



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 13 tgttcataagtactagtgccgcaggagtga 42
          ||||| |||||||||||||||| |||||||
Sbjct: 21 tgttcctaagtactagtgccgcgggagtga 50




>RF00838;mir-252;AAZO01005296.1/52222-52118 121224:Pediculus
          humanus corporis (human body louse)
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48




>RF00838;mir-252;AAPP01019511.1/70614-70503 7217:Drosophila
          ananassae
          Length = 112

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 26 taagtactagtgccgcaggagt 47




>RF00838;mir-252;AAQB01009407.1/423501-423388 7260:Drosophila
          willistoni
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48




>RF00838;mir-252;AABU01002774.1/5715658-5715545 7227:Drosophila
          melanogaster (fruit fly)
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48




>RF00838;mir-252;AAFS01000005.1/103510-103621 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 112

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48




>RF00838;mir-252;AAPT01019325.1/16150-16037 7222:Drosophila
          grimshawi
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48




>RF00838;mir-252;AAPU01011022.1/144995-144882 7230:Drosophila
          mojavensis
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48




>RF00838;mir-252;AANI01014608.1/9402-9515 7244:Drosophila virilis
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 taagtactagtgccgcaggagt 40
          ||||||||||||||||||||||
Sbjct: 27 taagtactagtgccgcaggagt 48