miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: AATCACAGGATAATACTGCGAG

selected species: Bombyx mori

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Bombyx mori	GSM449725_whole_body_clean	AATCACAGGATAATACTGCGAG	CGTGGTATTATTCTTGTGAATGT	down	2	1

Secondary structure

AAAACTTATGCGTCGTTTCCACGCGTGGTATTATTCTTGTGAATGTGTTTTAGCTACAATCACAGGATAATACTGCGAGTGGCGGTGTCGCGTTACGTC
-----------------------CGTGGTATTATTCTTGTGAATGT 	85
-----------------------CGTGGTATTATTCTTGTGAATG 	2
---------------------------------------------------------AATCACAGGATAATACTGCGAGT 	34
---------------------------------------------------------AATCACAGGATAATACTGCGAG 	523
---------------------------------------------------------AATCACAGGATAATACTGCGA 	245
---------------------------------------------------------AATCACAGGATAATACTGCG 	6
---------------------------------------------------------AATCACAGGATAATACTGC 	3
----------------------------------------------------------ATCACAGGATAATACTGCGAG 	2
----------------------------------------------------------ATCACAGGATAATACTGCGAGT 	1

Overlaps with: MNEST035565
Overlaps with miRBase pre-miRNAs: bmo-mir-308
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Bombyx mori	GSM449726_Anterior_silkgland_clean	AATCACAGGATAATACTGCGAG	CGTGGTATTATTCTTGTGAATGT	down	2	1

Secondary structure

AAAACTTATGCGTCGTTTCCACGCGTGGTATTATTCTTGTGAATGTGTTTTAGCTACAATCACAGGATAATACTGCGAGTGGCGGTGTCGCGTTACGTC
-----------------------CGTGGTATTATTCTTGTGAATGT 	329
-----------------------CGTGGTATTATTCTTGTGAATG 	24
-----------------------CGTGGTATTATTCTTGTGAAT 	10
-----------------------CGTGGTATTATTCTTGTGAA 	3
------------------------GTGGTATTATTCTTGTGAATGT 	10
------------------------GTGGTATTATTCTTGTGAATG 	1
--------------------------------------------------------CAATCACAGGATAATACTGCGAG 	2
---------------------------------------------------------AATCACAGGATAATACTGCGAGT 	942
---------------------------------------------------------AATCACAGGATAATACTGCGAG 	35232
---------------------------------------------------------AATCACAGGATAATACTGCGA 	2265
---------------------------------------------------------AATCACAGGATAATACTGCG 	78
---------------------------------------------------------AATCACAGGATAATACTGC 	511
---------------------------------------------------------AATCACAGGATAATACTGCGAGTGG 	1
----------------------------------------------------------ATCACAGGATAATACTGCGAGT 	8
----------------------------------------------------------ATCACAGGATAATACTGCGAG 	3
-------------------------------------------------------------ACAGGATAATACTGCGAGT 	11

Overlaps with: MNEST035565
Overlaps with miRBase pre-miRNAs: bmo-mir-308
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Bombyx mori	GSM449727_Posterior_silkgland_clean	AATCACAGGATAATACTGCGAG	CGTGGTATTATTCTTGTGAATGT	down	2	1

Secondary structure

AAAACTTATGCGTCGTTTCCACGCGTGGTATTATTCTTGTGAATGTGTTTTAGCTACAATCACAGGATAATACTGCGAGTGGCGGTGTCGCGTTACGTC
-----------------------CGTGGTATTATTCTTGTGAATGT 	35
-----------------------CGTGGTATTATTCTTGTGAATG 	3
-----------------------CGTGGTATTATTCTTGTGAAT 	3
-----------------------CGTGGTATTATTCTTGTGAA 	1
------------------------GTGGTATTATTCTTGTGAATG 	1
------------------------GTGGTATTATTCTTGTGAATGT 	1
--------------------------------------------------------CAATCACAGGATAATACTGCGAG 	2
---------------------------------------------------------AATCACAGGATAATACTGCGAGT 	65
---------------------------------------------------------AATCACAGGATAATACTGCGAG 	5477
---------------------------------------------------------AATCACAGGATAATACTGCGA 	556
---------------------------------------------------------AATCACAGGATAATACTGC 	174
---------------------------------------------------------AATCACAGGATAATACTGCG 	26
----------------------------------------------------------ATCACAGGATAATACTGCGAG 	1

Overlaps with: MNEST035565
Overlaps with miRBase pre-miRNAs: bmo-mir-308
HuntMi prediction: true miRNA