miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: CGCGGGAGAAAAGTAGGACATT

selected species: Bombyx mori



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean CGCGGGAGAAAAGTAGGACATT TGTCCTACTTTTCTCCCTTGCT up 1 0


Secondary structure

TAGAAAAAATAGTATGTGCACCGCGGGAGAAAAGTAGGACATTTCATCCCGCATGTAAAATTGCCACTCGAGCCGAAGGCGAGGAAATGTCCTACTTTTCTCCCTTGCTGCACAATGTACTATTGTG
-------------------ACCGCGGGAGAAAAGTAGGACA 	1
---------------------CGCGGGAGAAAAGTAGGACATT 	13
---------------------CGCGGGAGAAAAGTAGGACATTTC 	1
---------------------CGCGGGAGAAAAGTAGGACATTT 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449725_whole_body_clean CGCGGGAGAAAAGTAGGACATT TGTCCTACTTTTTCCCGCGGT up 0 1


Secondary structure

GCGTTGCCCGGGCCATGTCTTTCGCCACGCCAAAAATAGTACATTGTGCACCGCGGGAGAAAAGTAGGACATTTCCTCCCACGCGGGATGAGATGTCCTACTTTTTCCCGCGGTGCACATACTATTTTTCTCCTAGCAGGCCGAAAGTTCGTGGAGTACCGA
-------------------------------------------------ACCGCGGGAGAAAAGTAGGACA 	1
---------------------------------------------------CGCGGGAGAAAAGTAGGACATT 	13
---------------------------------------------------CGCGGGAGAAAAGTAGGACATTTC 	1
---------------------------------------------------CGCGGGAGAAAAGTAGGACATTTCCT 	1
---------------------------------------------------CGCGGGAGAAAAGTAGGACATTT 	1
---------------------------------------------------------AGAAAAGTAGGACATTTCCT 	1
---------------------------------------------------------------------------------CGCGGGATGAGATGTCCTACTTT 	1


Overlaps with: MNEST035646
Overlaps with miRBase pre-miRNAs: bmo-mir-2775a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Bombyx mori GSM449726_Anterior_silkgland_clean CGCGGGAGAAAAGTAGGACATT TGTCCTACTTTTCTCCCTTGCT up 1 0


Secondary structure

TAGAAAAAATAGTATGTGCACCGCGGGAGAAAAGTAGGACATTTCATCCCGCATGTAAAATTGCCACTCGAGCCGAAGGCGAGGAAATGTCCTACTTTTCTCCCTTGCTGCACAATGTACTATTGTG
-----AAAATAGTATGTGCACCGCG 	1
-------------------ACCGCGGGAGAAAAGTAGGA 	2
-------------------ACCGCGGGAGAAAAGTAGGACA 	1
-------------------ACCGCGGGAGAAAAGTAGGAC 	1
--------------------CCGCGGGAGAAAAGTAGGACA 	1
---------------------CGCGGGAGAAAAGTAGGACATT 	16
---------------------CGCGGGAGAAAAGTAGGACAT 	2
---------------------CGCGGGAGAAAAGTAGGACATTTC 	2
-----------------------CGGGAGAAAAGTAGGACATTTC 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Bombyx mori GSM449726_Anterior_silkgland_clean CGCGGGAGAAAAGTAGGACATT TGTCCTACTTTTTCCCGCGGT up 0 1


Secondary structure

GCGTTGCCCGGGCCATGTCTTTCGCCACGCCAAAAATAGTACATTGTGCACCGCGGGAGAAAAGTAGGACATTTCCTCCCACGCGGGATGAGATGTCCTACTTTTTCCCGCGGTGCACATACTATTTTTCTCCTAGCAGGCCGAAAGTTCGTGGAGTACCGA
-------------------------------------------------ACCGCGGGAGAAAAGTAGGA 	2
-------------------------------------------------ACCGCGGGAGAAAAGTAGGACA 	1
-------------------------------------------------ACCGCGGGAGAAAAGTAGGAC 	1
--------------------------------------------------CCGCGGGAGAAAAGTAGGACA 	1
---------------------------------------------------CGCGGGAGAAAAGTAGGACATT 	16
---------------------------------------------------CGCGGGAGAAAAGTAGGACAT 	2
---------------------------------------------------CGCGGGAGAAAAGTAGGACATTTC 	2
-----------------------------------------------------CGGGAGAAAAGTAGGACATTTC 	1
---------------------------------------------------------------------------------CGCGGGATGAGATGTCCTACTTT 	3
---------------------------------------------------------------------------------CGCGGGATGAGATGTCCTACTT 	1


Overlaps with: MNEST035646
Overlaps with miRBase pre-miRNAs: bmo-mir-2775a
HuntMi prediction: true miRNA