miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: CTCGGTGGAAGATCGTCCCT

selected species: Bombyx mori

5 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Bombyx mori	GSM449725_whole_body_clean	CTCGGTGGAAGATCGTCCCT	GGACCATCGGTCTACCGAGCA	down	4	1

Secondary structure

AAAAAAAACATTCGGACCATCGGTCTACCGAGCAATATCACCCGCTCGGTGGAAGATCGTCCCTCCGTCGTTAA
--------------------------------------------CTCGGTGGAAGATCGTCCCT 	56
--------------------------------------------CTCGGTGGAAGATCGTCCC 	15

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Bombyx mori	GSM449725_whole_body_clean	CTCGGTGGAAGATCGTCCCT	GGATCGCCGGTCTACCGAGCA	down	4	1

Secondary structure

CATTAATGCCATTTCCAAGATAAGACGATAAGGGATCGCCGGTCTACCGAGCAATATCACCCGCTCGGTGGAAGATCGTCCCTTAATCTTCACTATGGAAACTCTTTAGTCC
---------------------------------------------------------------CTCGGTGGAAGATCGTCCCTT 	31
---------------------------------------------------------------CTCGGTGGAAGATCGTCCCT 	56
---------------------------------------------------------------CTCGGTGGAAGATCGTCCC 	15
---------------------------------------------------------------CTCGGTGGAAGATCGTCCCTTA 	3

Overlaps with: MNEST035639
Overlaps with miRBase pre-miRNAs: bmo-mir-2774a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Bombyx mori	GSM449726_Anterior_silkgland_clean	CTCGGTGGAAGATCGTCCCT	GGACCATCGGTCTACCGAGCA	down	4	1

Secondary structure

AAAAAAAACATTCGGACCATCGGTCTACCGAGCAATATCACCCGCTCGGTGGAAGATCGTCCCTCCGTCGTTAA
--------------------CGGTCTACCGAGCAATATCA 	2
----------------------GTCTACCGAGCAATATCACCCG 	1
----------------------GTCTACCGAGCAATATCACC 	1
-------------------------TACCGAGCAATATCACCCGC 	1
-------------------------TACCGAGCAATATCACCCGCT 	1
--------------------------------CAATATCACCCGCTCGGTGG 	1
--------------------------------CAATATCACCCGCTCGGTGGA 	1
----------------------------------ATATCACCCGCTCGGTGGAAGA 	1
--------------------------------------------CTCGGTGGAAGATCGTCCCT 	48
--------------------------------------------CTCGGTGGAAGATCGTCCC 	12
--------------------------------------------CTCGGTGGAAGATCGTCCCTC 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Bombyx mori	GSM449726_Anterior_silkgland_clean	CTCGGTGGAAGATCGTCCCTT	GGGATCGCCGGTCTACCGAGCA	down	4	1

Secondary structure

TCATTAATGCCATTTCCAAGATAAGACGATAAGGGATCGCCGGTCTACCGAGCAATATCACCCGCTCGGTGGAAGATCGTCCCTTAATCTTCACTATGGAAACTCTTTAGTCCC
----------------------------------------CGGTCTACCGAGCAATATCA 	2
------------------------------------------GTCTACCGAGCAATATCACCCG 	1
------------------------------------------GTCTACCGAGCAATATCACC 	1
---------------------------------------------TACCGAGCAATATCACCCGC 	1
---------------------------------------------TACCGAGCAATATCACCCGCT 	1
----------------------------------------------------CAATATCACCCGCTCGGTGG 	1
----------------------------------------------------CAATATCACCCGCTCGGTGGA 	1
------------------------------------------------------ATATCACCCGCTCGGTGGAAGA 	1
----------------------------------------------------------------CTCGGTGGAAGATCGTCCCTT 	70
----------------------------------------------------------------CTCGGTGGAAGATCGTCCCT 	48
----------------------------------------------------------------CTCGGTGGAAGATCGTCCC 	12
----------------------------------------------------------------CTCGGTGGAAGATCGTCCCTTA 	1

Overlaps with: MNEST035639
Overlaps with miRBase pre-miRNAs: bmo-mir-2774a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Bombyx mori	GSM449727_Posterior_silkgland_clean	CTCGGTGGAAGATCGTCCCT	GGACCATCGGTCTACCGAGCA	down	4	1

Secondary structure

AAAAAAAACATTCGGACCATCGGTCTACCGAGCAATATCACCCGCTCGGTGGAAGATCGTCCCTCCGTCGTTAA
---------------------------------AATATCACCCGCTCGGTGGA 	5
--------------------------------------------CTCGGTGGAAGATCGTCCCT 	44
--------------------------------------------CTCGGTGGAAGATCGTCCC 	5

HuntMi prediction: true miRNA