miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TCAGGTACCTGAAGTAGCGCG

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TCAGGTACCTGAAGTAGCGCG GGCTGCTACAGGCACTCTTAGACT down 4 3


Secondary structure

CGAGAAATCGGTTGTTTTCACGGGCTGCTACAGGCACTCTTAGACTCTTTAATGTTGACGAAGTCAGGTACCTGAAGTAGCGCGTGGAAATTTAACCAAATCG
----------------------GGCTGCTACAGGCACTCTTAGACT 	8
----------------------GGCTGCTACAGGCACTCTTAGACTC 	1
-----------------------GCTGCTACAGGCACTCTTAGACT 	1
-------------------------TGCTACAGGCACTCTTAGACT 	1
--------------------------------------------------------------GTCAGGTACCTGAAGTAGCGCG 	10
---------------------------------------------------------------TCAGGTACCTGAAGTAGCGCGT 	1383
---------------------------------------------------------------TCAGGTACCTGAAGTAGCGCG 	6548
---------------------------------------------------------------TCAGGTACCTGAAGTAGCGC 	138
---------------------------------------------------------------TCAGGTACCTGAAGTAGCG 	1335
---------------------------------------------------------------TCAGGTACCTGAAGTAGCGCGTG 	3
---------------------------------------------------------------TCAGGTACCTGAAGTAGCGCGTGG 	1
----------------------------------------------------------------CAGGTACCTGAAGTAGCGCGT 	3
----------------------------------------------------------------CAGGTACCTGAAGTAGCGCG 	7
-----------------------------------------------------------------AGGTACCTGAAGTAGCGCGT 	11
-----------------------------------------------------------------AGGTACCTGAAGTAGCGCG 	44

Overlaps with: MNEST035075
Overlaps with miRBase pre-miRNAs: api-mir-275
HuntMi prediction: true miRNA