miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACTAGATCCACACTCATCC

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TGACTAGATCCACACTCATCC ATGGGTGTGTGTCTAGTGACATG down 2 2


Secondary structure

ACGGGATTGTTGATGGGTGTGTGTCTAGTGACATGCGTTTTATATTTGACAGACATGACTAGATCCACACTCATCCATGTTCCCG
------------ATGGGTGTGTGTCTAGTGACATG 	17
------------ATGGGTGTGTGTCTAGTGACAT 	4
------------ATGGGTGTGTGTCTAGTGACA 	3
-----------------------------------CGTTTTATATTTGACAGACA 	1
-------------------------------------------------------TGACTAGATCCACACTCATCC 	75
-------------------------------------------------------TGACTAGATCCACACTCATCCAT 	3
-------------------------------------------------------TGACTAGATCCACACTCATCCA 	39
-------------------------------------------------------TGACTAGATCCACACTCATC 	14
-------------------------------------------------------TGACTAGATCCACACTCAT 	6

Overlaps with: MNEST035079
Overlaps with miRBase pre-miRNAs: api-mir-279a
HuntMi prediction: true miRNA