miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACTAGATCCATACTCGTCTG

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449726_Anterior_silkgland_clean TGACTAGATCCATACTCGTCTG GGCGAGTTTGCTTCTGGTTCATG down 3 1


Secondary structure

ATGATATTTGTGGGCGAGTTTGCTTCTGGTTCATGTTTTATATTGATCATGACTAGATCCATACTCGTCTGCAGCCATCA
-----------GGGCGAGTTTGCTTCTGGTTCAT 	4
-----------GGGCGAGTTTGCTTCTGGTTCA 	2
-----------GGGCGAGTTTGCTTCTGGTTCATG 	1
-----------GGGCGAGTTTGCTTCTGGTTC 	1
------------GGCGAGTTTGCTTCTGGTTCA 	2
------------GGCGAGTTTGCTTCTGGTTCATG 	1
----------------------------------------------TCATGACTAGATCCATACTCGT 	6
-----------------------------------------------CATGACTAGATCCATACTCGT 	14
-----------------------------------------------CATGACTAGATCCATACTCGTC 	10
-----------------------------------------------CATGACTAGATCCATACTCG 	1
-----------------------------------------------CATGACTAGATCCATACTCGTCT 	1
------------------------------------------------ATGACTAGATCCATACTCGTCT 	30
------------------------------------------------ATGACTAGATCCATACTCGTCTG 	13
------------------------------------------------ATGACTAGATCCATACTCGTC 	6
------------------------------------------------ATGACTAGATCCATACTCGT 	2
------------------------------------------------ATGACTAGATCCATACTCG 	1
-------------------------------------------------TGACTAGATCCATACTCGTCTGCA 	370
-------------------------------------------------TGACTAGATCCATACTCGTCTGC 	7590
-------------------------------------------------TGACTAGATCCATACTCGTCTG 	26105
-------------------------------------------------TGACTAGATCCATACTCGTCT 	9080
-------------------------------------------------TGACTAGATCCATACTCGTC 	1025
-------------------------------------------------TGACTAGATCCATACTCGT 	1053
--------------------------------------------------GACTAGATCCATACTCGTCTG 	106
--------------------------------------------------GACTAGATCCATACTCGTCTGC 	50
--------------------------------------------------GACTAGATCCATACTCGTCT 	33
--------------------------------------------------GACTAGATCCATACTCGTCTGCA 	8
--------------------------------------------------GACTAGATCCATACTCGTC 	2
---------------------------------------------------ACTAGATCCATACTCGTCTG 	33
---------------------------------------------------ACTAGATCCATACTCGTCTGCA 	11
---------------------------------------------------ACTAGATCCATACTCGTCTGC 	17
---------------------------------------------------ACTAGATCCATACTCGTCT 	9



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449727_Posterior_silkgland_clean TGACTAGATCCATACTCGTCTG GGCGAGTTTGCTTCTGGTTCATG down 3 1


Secondary structure

ATGATATTTGTGGGCGAGTTTGCTTCTGGTTCATGTTTTATATTGATCATGACTAGATCCATACTCGTCTGCAGCCATCA
-----------GGGCGAGTTTGCTTCTGGTTCA 	1
-----------------------------------------------CATGACTAGATCCATACTCGTCT 	1
-----------------------------------------------CATGACTAGATCCATACTCGT 	1
------------------------------------------------ATGACTAGATCCATACTCGTCT 	2
------------------------------------------------ATGACTAGATCCATACTCGTCTG 	1
-------------------------------------------------TGACTAGATCCATACTCGTCTGCA 	52
-------------------------------------------------TGACTAGATCCATACTCGTCTGC 	1106
-------------------------------------------------TGACTAGATCCATACTCGTCTG 	4163
-------------------------------------------------TGACTAGATCCATACTCGTCT 	1470
-------------------------------------------------TGACTAGATCCATACTCGTC 	215
-------------------------------------------------TGACTAGATCCATACTCGT 	147
--------------------------------------------------GACTAGATCCATACTCGTCTG 	11
--------------------------------------------------GACTAGATCCATACTCGTCT 	7
--------------------------------------------------GACTAGATCCATACTCGTCTGCA 	2
--------------------------------------------------GACTAGATCCATACTCGTCTGC 	2
---------------------------------------------------ACTAGATCCATACTCGTCTG 	7
---------------------------------------------------ACTAGATCCATACTCGTCTGC 	3
---------------------------------------------------ACTAGATCCATACTCGTCT 	1
---------------------------------------------------ACTAGATCCATACTCGTCTGCA 	1



HuntMi prediction: true miRNA