miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGACTAGATCTACACTCATCA

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TGACTAGATCTACACTCATCA GTGGGTGTTTTTCTAGTCGAC down 5 0


Secondary structure

AATGTACAATGGTTAGACGGTCCGTGGGTGTTTTTCTAGTCGACACTGAATATTCAAAGCTGTGACTAGATCTACACTCATCAACTGCTTACCTGTTTCATGC
----------------------CGTGGGTGTTTTTCTAGTCGACA 	148
----------------------CGTGGGTGTTTTTCTAGTCGAC 	4
----------------------CGTGGGTGTTTTTCTAGTCGA 	2
----------------------CGTGGGTGTTTTTCTAGTCG 	1
-----------------------GTGGGTGTTTTTCTAGTCGACA 	1
------------------------------------------------------------TGTGACTAGATCTACACTCATCA 	1
--------------------------------------------------------------TGACTAGATCTACACTCATCAA 	121
--------------------------------------------------------------TGACTAGATCTACACTCATCA 	394
--------------------------------------------------------------TGACTAGATCTACACTCATC 	30
--------------------------------------------------------------TGACTAGATCTACACTCAT 	10

Overlaps with: MNEST035080
Overlaps with miRBase pre-miRNAs: api-mir-279b
HuntMi prediction: true miRNA