miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGAGATCTTGATAAACTCGCCT

selected species: Acyrthosiphon pisum



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TGAGATCTTGATAAACTCGCCT GCGAGGATATAAAGATCTTATT up 3 0


Secondary structure

TTGTTATTGAGTGAGATCTTGATAAACTCGCCTGTGAATTTTTAAAACTAGGCGAGGATATAAAGATCTTATTTGGTACTC
-----------TGAGATCTTGATAAACTCGCCT 	7247
-----------TGAGATCTTGATAAACTCGCC 	919
-----------TGAGATCTTGATAAACTCGC 	752
-----------TGAGATCTTGATAAACTCG 	89
------------GAGATCTTGATAAACTCGCCT 	6
-------------AGATCTTGATAAACTCGCCT 	7
---------------------------------------------------GCGAGGATATAAAGATCTTATT 	29
---------------------------------------------------GCGAGGATATAAAGATCTTAT 	3
---------------------------------------------------GCGAGGATATAAAGATCTTATTT 	1
-----------------------------------------------------GAGGATATAAAGATCTTATT 	1


Overlaps with: MNEST035154
Overlaps with miRBase pre-miRNAs: api-mir-3050
HuntMi prediction: true miRNA