miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TGGAATGTAAAGAAGTATGGAG

selected species: Bombyx mori



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449725_whole_body_clean TGGAATGTAAAGAAGTATGGAG CCGTGCTTCCTTACTTCCCATA down 4 0


Secondary structure

AAGAAAAAGCCTTGCGCAAGTTCCGTGCTTCCTTACTTCCCATAGTCATTGTAATCATATGGAATGTAAAGAAGTATGGAGCTGCGCGGGCGTGCCCACG
----------------------CCGTGCTTCCTTACTTCCCAT 	1
--------------------------------------------------------ATATGGAATGTAAAGAAGTA 	1
---------------------------------------------------------TATGGAATGTAAAGAAGTATGGA 	10
---------------------------------------------------------TATGGAATGTAAAGAAGTATGG 	2
----------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	341
----------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	852
----------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	201
----------------------------------------------------------ATGGAATGTAAAGAAGTATG 	5
----------------------------------------------------------ATGGAATGTAAAGAAGTATGGAGC 	1
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCTG 	8
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAGCT 	367
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	1976
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	606068
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	13735
-----------------------------------------------------------TGGAATGTAAAGAAGTATGG 	2900
-----------------------------------------------------------TGGAATGTAAAGAAGTATG 	219
------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	34
------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	1
-------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	23
-------------------------------------------------------------GAATGTAAAGAAGTATGGAGCT 	4
-------------------------------------------------------------GAATGTAAAGAAGTATGGA 	2
--------------------------------------------------------------AATGTAAAGAAGTATGGAG 	4


Overlaps with: MNEST035513
Overlaps with miRBase pre-miRNAs: bmo-mir-1b bmo-mir-1a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449726_Anterior_silkgland_clean TGGAATGTAAAGAAGTATGGAG CCGTGCTTCCTTACTTCCCATA down 4 0


Secondary structure

AAGAAAAAGCCTTGCGCAAGTTCCGTGCTTCCTTACTTCCCATAGTCATTGTAATCATATGGAATGTAAAGAAGTATGGAGCTGCGCGGGCGTGCCCACG
---------------------------------------------------------TATGGAATGTAAAGAAGTATGG 	1
---------------------------------------------------------TATGGAATGTAAAGAAGTATGGA 	1
----------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	186
----------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	34
----------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	6
----------------------------------------------------------ATGGAATGTAAAGAAGTAT 	1
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	6715
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	922
-----------------------------------------------------------TGGAATGTAAAGAAGTATGG 	143
-----------------------------------------------------------TGGAATGTAAAGAAGTATG 	92
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	22
------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	34
-------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	13
--------------------------------------------------------------AATGTAAAGAAGTATGGAGC 	1


Overlaps with: MNEST035513
Overlaps with miRBase pre-miRNAs: bmo-mir-1b bmo-mir-1a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Bombyx mori GSM449727_Posterior_silkgland_clean TGGAATGTAAAGAAGTATGGAG CCGTGCTTCCTTACTTCCCATA down 4 0


Secondary structure

AAGAAAAAGCCTTGCGCAAGTTCCGTGCTTCCTTACTTCCCATAGTCATTGTAATCATATGGAATGTAAAGAAGTATGGAGCTGCGCGGGCGTGCCCACG
----------------------------------------------------------ATGGAATGTAAAGAAGTATGGA 	34
----------------------------------------------------------ATGGAATGTAAAGAAGTATGG 	6
----------------------------------------------------------ATGGAATGTAAAGAAGTATGGAG 	4
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAG 	2841
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGA 	518
-----------------------------------------------------------TGGAATGTAAAGAAGTATGG 	90
-----------------------------------------------------------TGGAATGTAAAGAAGTATG 	42
-----------------------------------------------------------TGGAATGTAAAGAAGTATGGAGC 	8
------------------------------------------------------------GGAATGTAAAGAAGTATGGAG 	25
------------------------------------------------------------GGAATGTAAAGAAGTATGGA 	4
------------------------------------------------------------GGAATGTAAAGAAGTATGG 	2
-------------------------------------------------------------GAATGTAAAGAAGTATGGAG 	2


Overlaps with: MNEST035513
Overlaps with miRBase pre-miRNAs: bmo-mir-1b bmo-mir-1a
HuntMi prediction: true miRNA