miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TGGGAAGTAAGGAAGCACGGAA

selected species: Bombyx mori



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Bombyx mori GSM449726_Anterior_silkgland_clean TGGGAAGTAAGGAAGCACGGAA CCATACTTCTTTACATTCCATA down 5 0


Secondary structure

TCGTGGGCACGCCCGCGCAGCTCCATACTTCTTTACATTCCATATGATTACAATGACTATGGGAAGTAAGGAAGCACGGAACTTGCGCAAGGCTTTTTCT
----------------------CCATACTTCTTTACATTCCATA 	4
-----------------------CATACTTCTTTACATTCCATA 	1
-----------------------------------------------------------TGGGAAGTAAGGAAGCACGGAA 	54
-----------------------------------------------------------TGGGAAGTAAGGAAGCACGGA 	19

Overlaps with: MNEST035513
Overlaps with miRBase pre-miRNAs: bmo-mir-1b bmo-mir-1a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Bombyx mori GSM449727_Posterior_silkgland_clean TGGGAAGTAAGGAAGCACGGAA CCATACTTCTTTACATTCCATA down 5 0


Secondary structure

TCGTGGGCACGCCCGCGCAGCTCCATACTTCTTTACATTCCATATGATTACAATGACTATGGGAAGTAAGGAAGCACGGAACTTGCGCAAGGCTTTTTCT
-----------------------CATACTTCTTTACATTCCAT 	1
-----------------------------------------------------------TGGGAAGTAAGGAAGCACGGAA 	6
-----------------------------------------------------------TGGGAAGTAAGGAAGCACGGA 	3

Overlaps with: MNEST035513
Overlaps with miRBase pre-miRNAs: bmo-mir-1b bmo-mir-1a
HuntMi prediction: true miRNA