miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


4 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
918Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_10773.6 cdna:novel chromosome:030312v2:2:455211817:455213748:-1 gene:MLOC_10773 transcript:MLOC_10773.622250422.5
5'     CTCCGTTCCTAAATATAAGTT        3'
       |||||||||||||||o  |||
3' GAGGGAGGCAAGGATTTATGAACAACAACCCC 5'
1017Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_72099.7 cdna:novel chromosome:030312v2:5:545657294:545660369:1 gene:MLOC_72099 transcript:MLOC_72099.721160.0131.52.5
5'     CTCCGTTCCTAAATATA-AGTT       3'
       ||||||||||||||||| |o |
3' GAGGGAGGCAAGGATTTATATATTCAAATAGC 5'
1024Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52639.4 cdna:novel chromosome:030312v2:7:533269741:533273012:1 gene:MLOC_52639 transcript:MLOC_52639.4213650412.5
5'     CTCCGTTCCTAAATATAAGTT        3'
       |||||||||||||||o  |||
3' GAGGGAGGCAAGGATTTATGAACAACAACCCC 5'
1151Hordeum vulgareCTCCGTTCCTAAATATAAGTTalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_51860.2 cdna:novel chromosome:030312v2:3:12123027:12128342:-1 gene:MLOC_51860 transcript:MLOC_51860.2234950.05623.5
5'     CTCCGTTCCTAAATATAAGTT        3'
       |||||||||| ||||o| ||
3' GAGGGAGGCAAGGAATTATGT-CATATTCTGG 5'
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