miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
961Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.127880.01622
5'     CTGACAGAAGAGAGTGAGCAC        3'
        ||||||||||||| ||||||
3' ACTCAACTGTCTTCTCTCTCTCGTGTCGACCT 5'
971Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.11-15_DPAMLOC_52321.2 cdna:known chromosome:030312v2:3:518753339:518756802:-1 gene:MLOC_52321 transcript:MLOC_52321.226910411
5'     CTGACAGAAGAGAGTGAGCAC        3'
       |||||||||||||| ||||||
3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5'
1047Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_11199.1 cdna:known chromosome:030312v2:6HS:3424576:3430071:-1 gene:MLOC_11199 transcript:MLOC_11199.1226820.04294.142863
5'     CTGACAGAAGAGAGTGAGCAC        3'
        ||||||||||||| |||||
3' AACGAACTGTCTTCTCTCTCTCGTACGACTTC 5'
1096Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_61297.1 cdna:known chromosome:030312v2:7:224856072:224859310:-1 gene:MLOC_61297 transcript:MLOC_61297.127880.0141.333332
5'     CTGACAGAAGAGAGTGAGCAC        3'
        ||||||||||||| ||||||
3' ACTCAACTGTCTTCTCTCTCTCGTGTCGACCT 5'
1157Hordeum vulgareCTGACAGAAGAGAGTGAGCACalignmentplotGSE38755_PARE-unique.norm.1-5_DPAMLOC_52321.4 cdna:novel chromosome:030312v2:3:518753505:518756746:-1 gene:MLOC_52321 transcript:MLOC_52321.426370411
5'     CTGACAGAAGAGAGTGAGCAC        3'
       |||||||||||||| ||||||
3' AACAGACTGTCTTCTCTCTCTCGTGTCAACAC 5'
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