miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


5 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1183Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|11965315|gb|BE248055.2|BE248055 NF001A03DT1F1017 Drought Medicago truncatula cDNA clone NF001A03DT 5', mRNA sequence2190.0120.08695652
5'     TCTTCTTCTTCTTCTTGCACC        3'
       ||||||||||||||||| | |
3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCCTT 5'
1184Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|22088722|gb|AJ498279.1|AJ498279 AJ498279 MTPOSE Medicago truncatula cDNA clone mt--acc955203a09, mRNA sequence2760.0320.08695652
5'     TCTTCTTCTTCTTCTTGCACC        3'
       ||||||||||||||||| | |
3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCCTT 5'
1198Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|11901900|gb|BF637742.1|BF637742 NF040D12PL1F1096 Phosphate starved leaf Medicago truncatula cDNA clone NF040D12PL 5', mRNA se2220.0120.08695652
5'     TCTTCTTCTTCTTCTTGCACC        3'
       ||||||||||||||||| | |
3' GTAGAGAAGAAGAAGAAGAAC-TAGATTCGAG 5'
1200Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|7560622|gb|AW685886.1|AW685886 NF031D10NR1F1000 Nodulated root Medicago truncatula cDNA clone NF031D10NR 5', mRNA sequence05590.05111.3753.5
5'     TCTTCTTCTTCTTCTTGCACC        3'
       o||||o|| |||||o| ||||
3' AGGAGGAAGGAG-AGAAGGAGGTGGTGGCGGC 5'
1331Medicago truncatulaTCTTCTTCTTCTTCTTGCACCalignmentplotGSM643817_GDN-4gi|260520513|gb|GT136349.1|GT136349 METBM56TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence2560.05150.02155692
5'     TCTTCTTCTTCTTCTTGCACC        3'
       |||||||||||||||| || |
3' AAGAAGAAGAAGAAGAAGAA-GTCGTTTCTTG 5'
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