miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




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10 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1202Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|57501596|gb|CX532877.1|CX532877 s13dNF46C06MJ038_272036 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc23280130.5909091
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| |||||||||||||||
3' GTTAAATTAGTTCCTTTAATGTGAGCTACGTC 5'
1207Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|57493540|gb|CX524821.1|CX524821 s13dNF11D10AT090_478276 Aphid-Infected Shoots Medicago truncatula cDNA, mRNA sequence02000.0542214
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| ||||||||||  | |
3' GATTAATTAGTTCCTTTAATGCCA-CTATCTA 5'
1232Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|11962065|gb|BE317535.2|BE317535 NF051B08LF1F1061 Developing leaf Medicago truncatula cDNA clone NF051B08LF 5', mRNA sequence03360130.5909091
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| |||||||||||||||
3' GTTAAATTAGTTCCTTTAATGTGAGCTACGTC 5'
1234Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|209562076|gb|GE343848.1|GE343848 MEUA594TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence0336029293
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| |o|||||o||||| |
3' AAAAAATTAGTTTCTTTAGTGTGAACTCAACT 5'
1244Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|14870189|gb|BI266242.1|BI266242 NF089D06IN1F1058 Insect herbivory Medicago truncatula cDNA clone NF089D06IN 5', mRNA sequence03300130.5909093
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| ||| ||| |||||||
3' GTTAAATTAGTTCCATTANTGTGAGCTACGTC 5'
1248Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|20292305|gb|BQ155246.1|BQ155246 NF078C11IR1F1086 Irradiated Medicago truncatula cDNA clone NF078C11IR 5', mRNA sequence12240212.5
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| |o||||||||||| |
3' CAAAAATTAGTTTCTTTAATGTGAACATTAAC 5'
1280Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|260519358|gb|GT137907.1|GT137907 METC385TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence237104120.51.5
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| ||||||||||||o||
3' TATTAATTAGTTCCTTTAATGTGGGCTACCTT 5'
1308Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|260520915|gb|GT136751.1|GT136751 METBR04TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence03620293146.51.5
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| ||||||||||||o||
3' TATGAATTAGTTCCTTTAATGTGGGCTACTTT 5'
1310Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|209563806|gb|GE345116.1|GE345116 MEUAK59TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence237404120.51.5
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| ||||||||||||o||
3' TATTAATTAGTTCCTTTAATGTGGGCTACCTT 5'
1321Medicago truncatulaTTAATCTAGGAAATTACACTCGalignmentplotGSM643817_GDN-4gi|8529017|gb|BE124460.1|BE124460 EST393495 GVN Medicago truncatula cDNA clone pGVN-59P9, mRNA sequence0109027273.5
5'     TTAATCTAGGAAATTACACTCG       3'
       |||||| |||||||o||| | |
3' ACTAAATTAGTTCCTTTAGTGTCAACCATTAT 5'
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