miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures

Degradomes

7 records found

#	species	miRNA	short reads alignment	plot	library	transcript	category	cleavage position	P-value	fragment abundance	weighted fragment abundance	alignment score	miRNA-target alignment
1191	Medicago truncatula	TTACCTATTCCACCAATTCCAT	alignment	plot	GSM643817_GDN-4	gi\|157983461\|gb\|EX531733.1\|EX531733 MTGland_B027_2007-05-25/MTGlandB027_E09_036_1 Medicago truncatula A17 glandular trichome Med	0	68	0.03	497	497	4	5' TTACCTATTCCACCAATTCCAT 3' \|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\| 3' CCGAAATGGTTAAGGAGGGTAAGGTTGTAATG 5'
1223	Medicago truncatula	TTACCTATTCCACCAATTCCAT	alignment	plot	GSM643817_GDN-4	gi\|9685795\|gb\|AL386044.1\|AL386044 MtBC32C04F1 MtBC Medicago truncatula cDNA clone MtBC32C04 T3, mRNA sequence	0	13	0.01	135	1.73193	3	5' TTACCTATTCCACCAATTCCAT 3' oo\|\|\|\|\| \|\|\|\|\|\|\|\|\|o\|\|\|o 3' TAGTGGTGGATCAGGTGGTTAGGGTG 5'
1250	Medicago truncatula	TTACCTATTCCACCAATTCCAT	alignment	plot	GSM643817_GDN-4	gi\|209563266\|gb\|GE343973.1\|GE343973 MEUA743TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence	0	360	0.01	135	1.73193	3	5' TTACCTATTCCACCAATTCCAT 3' oo\|\|\|\|\| \|\|\|\|\|\|\|\|\|o\|\|\|o 3' TAGTGGTGGATCAGGTGGTTAGGGTGGACTAG 5'
1277	Medicago truncatula	TTACCTATTCCACCAATTCCAT	alignment	plot	GSM643817_GDN-4	gi\|11935465\|gb\|AW696680.2\|AW696680 NF109F07ST1F1062 Developing stem Medicago truncatula cDNA clone NF109F07ST 5', mRNA sequence	2	123	0.01	2	2	3	5' TTACCTATTCCACCAATTCCAT 3' \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|o\|\|\|o 3' ACAGAAGGGATAAGGTGGGTAGGGTGTTTAAG 5'
1304	Medicago truncatula	TTACCTATTCCACCAATTCCAT	alignment	plot	GSM643817_GDN-4	gi\|57501174\|gb\|CX532455.1\|CX532455 s13dNF66A11MJ081_271200 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago trunc	1	101	0	4	2	3	5' TTACCTATTCCACCAATTCCAT 3' \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| 3' ACTAAACGGATAAGGCGGCTAAGGTATTTACG 5'
1317	Medicago truncatula	TTACCTATTCCACCAATTCCAT	alignment	plot	GSM643817_GDN-4	gi\|209561029\|gb\|GE343715.1\|GE343715 MEUA443TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence	0	357	0	135	1.73193	3	5' TTACCTATTCCACCAATTCCAT 3' oo\|\|\|\|\| \|\|\|\|\|\|\|\|\|o\|\|\|o 3' TAGTGGTGGATCAGGTGGTTAGGGTGGACTAG 5'
1323	Medicago truncatula	TTACCTATTCCACCAATTCCAT	alignment	plot	GSM643817_GDN-4	gi\|14866334\|gb\|BI264259.1\|BI264259 NF110C09PL1F1070 Phosphate starved leaf Medicago truncatula cDNA clone NF110C09PL 5', mRNA se	0	602	0	3	3	2.5	5' TTACCTATTCCACCAATTCCAT 3' \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|o\|\| \| 3' ACAAAAGGGATAAGGTGGTTAGGGCATCTAGG 5'