miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: miRNA gene structures
Degradomes




Field:Contains:


6 records found


#

species

miRNA

short reads alignment

plot

library

transcript

category

cleavage position

P-value

fragment abundance

weighted fragment abundance

alignment score

miRNA-target alignment
1216Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157982721|gb|EX530993.1|EX530993 MTGland_B017_2007-05-25/MTGlandB017_H11_041_1 Medicago truncatula A17 glandular trichome Med2115020.6666672.5
5'     TTTTGGGACGGAGGGAGTATA        3'
        ||||||||||||||||||o
3' ATGTTAAACCCTGCCTCCCTCATGAGGGAATT 5'
1228Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157979068|gb|EX527340.1|EX527340 MTGland_A027_2007-06-13/MTGlandA027_E06_020_1 Medicago truncatula A17 glandular trichome Med2139020.51
5'     TTTTGGGACGGAGGGAGTATA        3'
        ||||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATATTATATAA 5'
1258Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157980308|gb|EX528580.1|EX528580 MTGland_A043_2007-05-31/MTGlandA043_E06_020_1 Medicago truncatula A17 glandular trichome Med0672020.51
5'     TTTTGGGACGGAGGGAGTATA        3'
        ||||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATATTCACTTC 5'
1292Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157980539|gb|EX528811.1|EX528811 MTGland_A046_2007-06-01/MTGlandA046__D01_005_1 Medicago truncatula A17 glandular trichome Me2521020.52
5'     TTTTGGGACGGAGGGAGTATA        3'
        |||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-TCTCCCCA 5'
1300Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|148765165|gb|ES611859.1|ES611859 MTGland_A012__2007-05-05/MTGlandA012__H01_001_1 Medicago truncatula A17 glandular trichome M0316020.6666672
5'     TTTTGGGACGGAGGGAGTATA        3'
        |||||||||||||||||| |
3' ATGTTAAACCCTGCCTCCCTCAT-TATGTATT 5'
1340Medicago truncatulaTTTTGGGACGGAGGGAGTATAalignmentplotGSM643817_GDN-4gi|157985004|gb|EX533276.1|EX533276 MTGland_B047_2007-06-23/MtGland_B047_E08_028_1 Medicago truncatula A17 glandular trichome Me2387020.52
5'     TTTTGGGACGGAGGGAGTATA        3'
        |||||||||||||||||||
3' ATGTTAAACCCTGCCTCCCTCATAAAAGAATT 5'
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