ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCTCTCCGTCCTAAAAT miRNA* TTTGAGACCGAGGAGTACCT mismatches: 3 bulges: 1 |
pre-miRNA
CGCGTTCACATATACTCTCTCCGTCCTAAAATAAGTGTCTTAATTTTTTATCAGCTTTAATACAAAGTTATATTATGGTTGAGACACTTATTTTGAGACC
GAGGAGTACCTTGCTGTCA
dot-bracket secondary structure
.(((........(((((.(((.(((.(((((((((((((((((((...(((.((((((.....)))))))))....))))))))))))))))))).))).
))))))))...))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCGTTCACATATACTCTCTCCGTCCTAAAATAAGTGTCTTAATTTTTTATCAGCTTTAATACAAAGTTATATTATGGTTGAGACACTTATTTTGAGACC
GAGGAGTACCTTGCTGTCA
dot-bracket secondary structure
.(((........(((((.(((.(((.(((((((((((((((((((...(((.((((((.....)))))))))....))))))))))))))))))).))).
))))))))...))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.000000000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
