miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Humulus lupulus



ABOUT THIS RECORD

ID: MNEST001270
species: Humulus lupulus
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Humulus lupulus Humulus Cannabaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCTTCCTCTTCCTCTTCCG

miRNA*
 GGTCAGGAAGAAGAAGAAGTA

mismatches: 5
bulges: 0
View larger
pre-miRNA
 CCTCAAGCTCTCCTCTTCCTCTTCCTCTTCCGTTGCCACCCCTTTTCTCCATGGCTCCACTCCCCTCTCTCTCCTCTCAAAACCCTCTTCCGCTCTCACC
AGTCCAACTCTGGCGCCGCCCTCTTTCCTTCCCCCAATCCGGGCCATGAGATCAATGCGGGGACGCGTCGTTTGCTCCACCAACGATAAGACCGTGGCCG
TGGAGGTGGTGCGTTTAGCTCCTCATCCCAAGTACAAGAGGCGGGTCAGGAAGAAGAAGAAGTACCAGGCAC

dot-bracket secondary structure
.............(((((.(((((((..((((..((((((.......(((((((((.........................((..((((.(((((((..(
(......(((((((.(((.....................))))))).))).....))..)))).)))(((((.........))))).))))..)))))))
))))))))))((.....)).((((.............))))))))..))))))).))))).((.....))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P16180|RR17_ARATH: 0.0000000005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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