ABOUT THIS RECORDspecies: Ipomoea batatas
miRNA family: MIRf144
source: miRNEST
Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCTTGTTTGGTGGCCACC miRNA* TGGTGATCCCGGGTCTATT mismatches: 3 bulges: 2 |
pre-miRNA
CAAGAGGAGAATGAGCTTGTTTGGTGGCCACCGGAGCCGGTGATGGAGCTCGCACGCCTTGCCGTTGACTCTGGTGGTGATCCCGGGTCTATTCATTGGG
C
dot-bracket secondary structure
........(((((.(((((...(((.((((((((((....((((((.((......))....)))))).)))))))))).))).))))).)))))......
.
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAAGAGGAGAATGAGCTTGTTTGGTGGCCACCGGAGCCGGTGATGGAGCTCGCACGCCTTGCCGTTGACTCTGGTGGTGATCCCGGGTCTATTCATTGGG
C
dot-bracket secondary structure
........(((((.(((((...(((.((((((((((....((((((.((......))....)))))).)))))))))).))).))))).)))))......
.
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
