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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001276
species: Ipomoea batatas
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTACACCTGCACCTGC

miRNA*
 AGGTGCAGAAGTAACTGCAGG

mismatches: 3
bulges: 0
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pre-miRNA
 GAACCAAAATGTAGCCTTTGTCTGCATTTACACCTGCACCTGCACTTGCCTCAGCCCAGATCGAAAGCCTAGCTGCTGTGGTTGCGCCGCCGCATGATGG
TGTATGTGCGGCCGGCCGGCCGGAAAATGATGATGGGATGAGCTGAGGTAGGTAGTAGGTGCAGAAGTAACTGCAGGTGAATGCCATTTTGGATAT

dot-bracket secondary structure
...((((((((..((.((((((((((.((((..((((((((((((((((((((((.((.........((((.......((((((.((((((((((.....
.....)))))).))))))))))...........)))).)).)))))))))))).))))))))))..)))).)))))))))).))))))))))....


SIMILARITIES
miRBase tcc-MIR530b: 0.0000006

PMRD ptc-miR530a: 0.00004

microPC miR530: 3e-83		UniProt no hits

RFAM MIR530: 0.0007		most similar mature miRNAs

Identical with: miR530 from microPC (MNEST046439)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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