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Species belonging to selected taxon:

Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa



ABOUT THIS RECORD

ID: MNEST001297
species: Lactuca perennis
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACCATA

mismatches: 2
bulges: 2
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pre-miRNA
 CAACAACAAGCGCATAACTCCATAGGAGTGACACTAAGAACCATATGGTTGAATTGCTATCTCCAGCGTATATTCATATGTTGTGAGCACAAATTTTTGA
TGCACATACAGTTGTTTGTCAGACCTTGTCCACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACCCTGTTTCCCCTTTTCATTCA

dot-bracket secondary structure
.......(((((.....(((((.(((.(((((.((.(((((((.(((((.((..((((.....((((((((....))))))))..))))(((...(((((
((.(((......))).)))))))..))))).))))).....)).))))).))))))).))).))))).....)))))..............


SIMILARITIES
miRBase vvi-MIR398a: 0.00000001

PMRD vvi-miR398a: 0.00000001

microPC miR398: 2e-56		UniProt no hits

RFAM MIR398: 0.0000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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