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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001298
species: Lactuca perennis
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1
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pre-miRNA
 CATAACTCCATAGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCAGTGTATATTCATATGTTGTCAGTACAAATTTTTGATGCACATACAG
TTGTTTGTGAGACATTGTCGACCATCCATTTGTGTTCTCAGGTCACCCCTTTGGAGCACC

dot-bracket secondary structure
.....(((((.(((.(((((.((.((((((((.((((((((..((...(((((((........((..((((((((...(((....))).)).))).))).
.)).))).))))))...)))))))).....)))))))).))))))).))).)))))....


SIMILARITIES
miRBase vvi-MIR398a: 0.000000008

PMRD vvi-miR398a: 0.000000008

microPC miR398: 1e-75		UniProt no hits

RFAM MIR398: 0.0000002		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046357)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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