miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001302
species: Lactuca saligna
miRNA family: MIR2004
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGTTTTTATGTTTTTTTGT

miRNA*
 ATTGTAATGTAAGGTTGAATG

mismatches: 5
bulges: 0
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pre-miRNA
 TTTAAATTTCATATTGTAATGTAAGGTTGAATGAGAGCCTAATGTTCGGATTTTGTTTGTTTTTATGTTTTTTTGTGGTAATTAA

dot-bracket secondary structure
....(((((((((....(((((((((.(((((((((.((........)).))))))))).)))))))))....))))).))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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