miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001306
species: Lactuca saligna
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGGGTGAAGGGAGCTCCTC

miRNA*
 GGAGCTCTCTATCGCCTCAACC

mismatches: 2
bulges: 1
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pre-miRNA
 ATATTTATGGTTGGAGCTCTCTATCGCCTCAACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCCTGTAGGTGCACCAATG
GTGTTGTAGTGTGCATTCTAAGGTTAGCATGAAGGTGGAGCTGTGGTTCGATCATCCTTTTGGGATTGGGGTGAAGGGAGCTCCTCCCATGATCA

dot-bracket secondary structure
....((((((..((((((((((.(((((((((.((((((((((.(((((..........((((((((.((((((((((...((((...(((((((((((.
..))))....)))))))...))))...)))))))).)))))))))).)))))..)))))))))).)))))))))))))))))))..))))))...


SIMILARITIES
miRBase ptc-MIR159e: 0.0006

PMRD ptc-miR159e: 0.0006

microPC miR159: 3e-95		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR159 from microPC (MNEST045899)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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