ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIRf1445
source: miRNEST
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTTATTCAAGAAGGCCAGA miRNA* CAGTAGTTCTTTGAAAAGTTAT mismatches: 5 bulges: 1 |
pre-miRNA
AAGTCCAGTATCCAGTAGTTCTTTGAAAAGTTATTCAGTGAAAACATCACTCGATTTTCCATCATCAGTTCTCAGAATCGATGAGAGCCCATCACCTGCT
TCTCTTGATTCTGTTGTGGTCCCAGGAATAGGTACCACAGAATGTGAAAAATACAGTACCAGCCCTATCAATTCACACGATTGTTTGGAGACTGATCAGC
TTATTCAAGAAGGCCAGATAGTGGACC
dot-bracket secondary structure
..(((((.((((..((..(((((.((.(((((..(((((((.....)))).....((((((....(((((..(((((((((.((((((.........)).
)))))))))))))(((((((.((.......)).)))))))..((((((.......................)))))).)))))..)))))).)))..)))
)).)).))))).))..)))).))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAGTCCAGTATCCAGTAGTTCTTTGAAAAGTTATTCAGTGAAAACATCACTCGATTTTCCATCATCAGTTCTCAGAATCGATGAGAGCCCATCACCTGCT
TCTCTTGATTCTGTTGTGGTCCCAGGAATAGGTACCACAGAATGTGAAAAATACAGTACCAGCCCTATCAATTCACACGATTGTTTGGAGACTGATCAGC
TTATTCAAGAAGGCCAGATAGTGGACC
dot-bracket secondary structure
..(((((.((((..((..(((((.((.(((((..(((((((.....)))).....((((((....(((((..(((((((((.((((((.........)).
)))))))))))))(((((((.((.......)).)))))))..((((((.......................)))))).)))))..)))))).)))..)))
)).)).))))).))..)))).))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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