miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001350
species: Lactuca virosa
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TGTTGGAATGGCTCAATCAAA

mismatches: 1
bulges: 0
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pre-miRNA
 TGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAAT
ATCATGAACTACTGTTAATTTGT

dot-bracket secondary structure
.......(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).)))))
)))))..))))))))).......


SIMILARITIES
miRBase tcc-MIR171f: 0.0000000001

PMRD vvi-miR171i: 0.0000000004

microPC miR171: 4e-44		UniProt no hits

RFAM MIR171_1: 0.000000007		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045103)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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