miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST001398
species: Limnanthes alba
miRNA family: MIR420
source: miRNEST

Taxonomy by NCBI:
Limnanthes alba Limnanthes Limnanthaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAAATTAATCATGGAAATGTA

miRNA*
 CATTTGTATCGGTGAATTTCAG

mismatches: 4
bulges: 1
View larger
pre-miRNA
 AAATACTCTATAGTTGAGCTTGAAATTAATCATGGAAATGTAGCTCATTTGTATCGGTGAATTTCAGTTTCATTTAGATTTTATA

dot-bracket secondary structure
......((((....((((.((((((((.((((((.(((((.....))))).))).))).)))))))).))))..)))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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