ABOUT THIS RECORDspecies: Mesembryanthemum crystallinum
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAGCTGTGGGAAA mismatches: 0 bulges: 0 |
pre-miRNA
CTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAA
GCTGTGGGAAAATATGGCG
dot-bracket secondary structure
..((((((.((((((((((((((((((((((((((((((..((((((...................))))))..)))).......)))))))))))))))
))))))))))).)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAA
GCTGTGGGAAAATATGGCG
dot-bracket secondary structure
..((((((.((((((((((((((((((((((((((((((..((((((...................))))))..)))).......)))))))))))))))
))))))))))).)))))).
SIMILARITIES| miRBase vvi-MIR396b: 0.00000000002 PMRD vvi-miR396b: 0.00000000002 microPC miR396: 1e-34 | UniProt no hits RFAM MIR396: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
