ABOUT THIS RECORDspecies: Nicotiana benthamiana
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTCGTTTGGCTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
AAAAGGAAGCTTTTCTATTGTGGGGAATGTCGTTTGGCTCGAGGATTCTTCAATCTTGATCAAATTCTTACTTTTTTTATAGATCTGTATATCAATATAT
AGAGATCCATAATATTGAATTATGTTTTTGGTATCGTCGGACCAGGCTTCATTCCCCTCAAAGATTGCTACCACTCA
dot-bracket secondary structure
....((.(((...(((.(((.((((((((..((((((.((((.(((...((((....(((..(((((.........((((.(((((.(((((....))))
).))))).))))....)))))..))).)))).))).)))).))))))..)))))))).))))))..))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAAGGAAGCTTTTCTATTGTGGGGAATGTCGTTTGGCTCGAGGATTCTTCAATCTTGATCAAATTCTTACTTTTTTTATAGATCTGTATATCAATATAT
AGAGATCCATAATATTGAATTATGTTTTTGGTATCGTCGGACCAGGCTTCATTCCCCTCAAAGATTGCTACCACTCA
dot-bracket secondary structure
....((.(((...(((.(((.((((((((..((((((.((((.(((...((((....(((..(((((.........((((.(((((.(((((....))))
).))))).))))....)))))..))).)))).))).)))).))))))..)))))))).))))))..))).)).....
SIMILARITIES| miRBase ath-MIR165b: 0.000000002 PMRD ath-miR165b: 0.000000002 microPC miR166: 0.0000000001 | UniProt no hits RFAM mir-166: 0.00000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
