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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001600
species: Nicotiana benthamiana
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTCGTTTGGCTCGAGG

mismatches: 3
bulges: 0
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pre-miRNA
 AAAAGGAAGCTTTTCTATTGTGGGGAATGTCGTTTGGCTCGAGGATTCTTCAATCTTGATCAAATTCTTACTTTTTTTATAGATCTGTATATCAATATAT
AGAGATCCATAATATTGAATTATGTTTTTGGTATCGTCGGACCAGGCTTCATTCCCCTCAAAGATTGCTACCACTCA

dot-bracket secondary structure
....((.(((...(((.(((.((((((((..((((((.((((.(((...((((....(((..(((((.........((((.(((((.(((((....))))
).))))).))))....)))))..))).)))).))).)))).))))))..)))))))).))))))..))).)).....


SIMILARITIES
miRBase ath-MIR165b: 0.000000002

PMRD ath-miR165b: 0.000000002

microPC miR166: 0.0000000001		UniProt no hits

RFAM mir-166: 0.00000004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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