ABOUT THIS RECORDspecies: Aristolochia fimbriata
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Aristolochia fimbriata Aristolochia Aristolochiaceae Piperales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
GAAAAGGGCTGTGCCTGGCTCCCTGTATGCCACACGTAGAGACCCATCTGTTTATGATCGGCTACTGCGGGTGGCGTGCGAGGAGCCAAGCATACCTCCT
CC
dot-bracket secondary structure
.....(((.(((((.(((((((.((((((((((.(((((((.((.(((.......))).)))).))))).)))))))))).))))))).))))))))...
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAAAGGGCTGTGCCTGGCTCCCTGTATGCCACACGTAGAGACCCATCTGTTTATGATCGGCTACTGCGGGTGGCGTGCGAGGAGCCAAGCATACCTCCT
CC
dot-bracket secondary structure
.....(((.(((((.(((((((.((((((((((.(((((((.((.(((.......))).)))).))))).)))))))))).))))))).))))))))...
..
SIMILARITIES| miRBase vvi-MIR160c: 0.000000000000001 PMRD vvi-miR160c: 0.000000000000001 microPC miR160: 1e-40 | UniProt no hits RFAM mir-160: 0.0000000000001 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046232) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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